Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa03g00012 | ATGTCGTCGAAGCATTTTCCGGATTTGGATTCTTCAGCGTCGCCCAATCCGATTCCCACGGATGTTACTCCGGCTCCTTTCGATCATCTACCCTCCACCACCACCTCCTCCACCCTCTCTGAATCTGACGAAAATCCCTGCACATCATCTTCACCTTCTTCCACTCCACCTCCGATTCACTTACCTCTCTCTTGGCCTCCCGATGCCACCCTTTCCCTCCAGTGGATACACCATCTAATCGCCGCCTTCGACTGGTCTTCCAAAAATTTACCTCCATCCCACTTTCCTTCCGTCCTTCCCGTCTCTGTTTTCGACACTCTAATCCTCACCGCTTCTAAAATCCTCCACAAAGAACCCAATTGCCTCAAAATCCTCCAAGATTCACCCCCCAGCAGCGACTCCACTGTAGTCGTCGTCGGAGACATCCACGGTCAATTTCATGATCTCCTCTTTCTTCTGCAGGATGCTGGTTTTCCTTCTGAAAACCGTTTCTTTGTCTTCAATGGGGACTACGTCGACAGAGGGGCTTGGGGTCTTGAAACTTTTTTGCTCTTATTGGCTTGGAAGGTGTTTATGCCACATCGTGTATTTCTTCTTCGTGGAAACCACGAATCCAAGTACTGCACATCCGTTTATGGTTTTGAGAAGGAGGTGCTAGCCAAGTATGGAGACAGAGGTAAGCACGTCTATCGGAAGTGTTTGGGGTGTTTCGAAGGGCTGCCTTTAGCCTCCATTATTGCTGGATGTGTATATACGGCTCATGGAGGACTTTTCCGCAGTATATCAGTTCCTTCGTCTAAAAGATCGAAAGGAAAAAAAAATCGTAGGATAATCTTAAATCCGGAAGCCAACGGGTTATCTCTTTGGTTCTTTGGAGGAGCTATCCAAAGCCAGAAGATCTGTTCTTGA | 909 | 47.85 | MSSKHFPDLDSSASPNPIPTDVTPAPFDHLPSTTTSSTLSESDENPCTSSSPSSTPPPIHLPLSWPPDATLSLQWIHHLIAAFDWSSKNLPPSHFPSVLPVSVFDTLILTASKILHKEPNCLKILQDSPPSSDSTVVVVGDIHGQFHDLLFLLQDAGFPSENRFFVFNGDYVDRGAWGLETFLLLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLAKYGDRGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSISVPSSKRSKGKKNRRIILNPEANGLSLWFFGGAIQSQKICS* | 303 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 245611 | 246793 | - | CsaV3_3G000120.1 | Csa03g00012 | 520917 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa03g00012 | 302 | MobiDBLite | consensus disorder prediction | 27 | 50 | - | - | |
| Csa03g00012 | 302 | PRINTS | Serine/threonine phosphatase family signature | 165 | 192 | IPR006186 | GO:0016787 | |
| Csa03g00012 | 302 | PRINTS | Serine/threonine phosphatase family signature | 135 | 162 | IPR006186 | GO:0016787 | |
| Csa03g00012 | 302 | PRINTS | Serine/threonine phosphatase family signature | 198 | 222 | IPR006186 | GO:0016787 | |
| Csa03g00012 | 302 | PRINTS | Serine/threonine phosphatase family signature | 235 | 261 | IPR006186 | GO:0016787 | |
| Csa03g00012 | 302 | PANTHER | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED | 40 | 269 | - | - | |
| Csa03g00012 | 302 | PANTHER | SERINE/THREONINE-PROTEIN PHOSPHATASE 7 | 40 | 269 | - | - | |
| Csa03g00012 | 302 | SUPERFAMILY | Metallo-dependent phosphatases | 94 | 262 | IPR029052 | - | |
| Csa03g00012 | 302 | SMART | pp2a_7 | 99 | 300 | IPR006186 | GO:0016787 | |
| Csa03g00012 | 302 | Pfam | Calcineurin-like phosphoesterase | 135 | 260 | IPR004843 | GO:0016787 | |
| Csa03g00012 | 302 | Gene3D | - | 94 | 292 | IPR029052 | - | |
| Csa03g00012 | 302 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Csa03g00012 | 302 | ProSitePatterns | Serine/threonine specific protein phosphatases signature. | 199 | 204 | IPR006186 | GO:0016787 | |
| Csa03g00012 | 302 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g00012 | Csa-Chr3:245611 | Csa05g01827 | Csa-Chr5:21615489 | 2.40E-81 | dispersed | |
| Csa03g00012 | Csa-Chr3:245611 | Csa06g01370 | Csa-Chr6:11645258 | 6.84E-29 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa03g00012 | K04460 | - | csv:116402510 | 565.844 |