Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00046 ATGCCGATTGAAGATGATGTTGAGAGCTGCGGTAGCAGAGCCACCGACTTCTCCTCTTCCCATGTCAACCCGAGGCATCATCGTCAGAAGCTTGAAGTTTACAACGAAGTTCTTCGACGAATCCAGCAATCCAATTTCCATGAAGCTAATCTACCTGGGTTTGATGATCAGCTTTGGCTTCATTTCAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCAGAAGATGTCCTTACCCATAAGAGATTACTTCAATTGGCTGTGGATCCGTCTAACCGACCTGTATTTGAAATTCGTTCTGTGCAGGTTTATCCTTCTGCTAATGAAAATTTTATCGATTCTTCTTGTTTGGATGCTTCTATGATGGAAGATGCTCAGAGTTCTTTGAACTATTCTAACAGACAGGGGAACCATCCACCTCCAACCTTTGGCTCTTCACCTAATCTTGAAGCCCCTACATTTCAGGGCAGCAAGTACGGTGTTGAAGATAGGGACAGTGCGCCAAATGTTACATCCAGCTTTTCTCGGCCAATGCATGAGATCACATTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTGACTTCCTTACTTGCTGATGTTGGACTTAACATACAAGAAGCTCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTCATCGACGGTTGGCCTTATGAGGAAACTGAGGAGCTGAAAAGGGTATTAGAAAAAGAAATTTTAAATTTTAAGGAGCAGTGTTGGTCCGAAAAGCAGCCCAGTTCTGCTTTGGGTAAGCATAACCAGAATAGAGTTGAATCTTTTCCTAGTTGTGTTGGAATACCTACTGATGGTACTGATGTCTGGGAAATGGACATCAGTCAACTAAAATTTGAGAATAAAGTTGGATCTGGGTCATTTGGGGACCTGTATCGGGGCACGTATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAGGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTTCAATTTCTTGGTGCTTGTACTAAACCTCCAAACCTCTGTATTGTGACAGAGTTTATGTCGAGAGGAAGTGTATATGACTTCCTTCATAAGCAAAGAGGTGTATTTAACCTTCCATCTTTACTTAAAGTGGCCATTAATATTTCAAGAGGGATGAACTATTTGCATCAAAATAATATAATCCATCGAGACCTCAAGACTGCAAATCTTCTGATGGATGAAAACATGGTTGTCAAGGTTGCTGATTTTGGAGTTGCCAGAGTTCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGATCATAAGGCAGACGTTTTCAGCTTTGGAATAGCCTTATGGGAGCTTTTAACTGGAGAAATTCCATACTCATCCATGACCCCACTACAAGCAGCAGTTGGCGTGGTCCAGAAGAGACTGCGGCCTACCATACCAAAGAATGCCCATCCTGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCACGATCCAACCGAACGGCCAAACTTCTCTGAAATTTTGGAGATCCTCAAGCAGATAGCTGAGCAGGTTGACAACAGCGGGGAAAATCGACGCAAGAAGGATAAGTTATCCGGTGCATTATTCTCAGCCTTCAAGAAGAGGCACCACTGA 1740 42.93 MPIEDDVESCGSRATDFSSSHVNPRHHRQKLEVYNEVLRRIQQSNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLAVDPSNRPVFEIRSVQVYPSANENFIDSSCLDASMMEDAQSSLNYSNRQGNHPPPTFGSSPNLEAPTFQGSKYGVEDRDSAPNVTSSFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPYEETEELKRVLEKEILNFKEQCWSEKQPSSALGKHNQNRVESFPSCVGIPTDGTDVWEMDISQLKFENKVGSGSFGDLYRGTYCSQEVAIKVLRPERINEEMLKEFSQEVYIMRKVRHKNVVQFLGACTKPPNLCIVTEFMSRGSVYDFLHKQRGVFNLPSLLKVAINISRGMNYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIALWELLTGEIPYSSMTPLQAAVGVVQKRLRPTIPKNAHPVLAELLERCWRHDPTERPNFSEILEILKQIAEQVDNSGENRRKKDKLSGALFSAFKKRHH* 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 453919 462029 - CsaV3_3G000460.1 Csa03g00046 520951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00046 579 SMART serkin_6 297 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00046 579 CDD STKc_MAP3K-like 303 546 - -
Csa03g00046 579 Pfam Protein tyrosine and serine/threonine kinase 297 546 IPR001245 GO:0004672|GO:0006468
Csa03g00046 579 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 564 - -
Csa03g00046 579 ProSiteProfiles ACT domain profile. 184 262 IPR002912 -
Csa03g00046 579 CDD ACT_TyrKc 182 249 - -
Csa03g00046 579 MobiDBLite consensus disorder prediction 1 25 - -
Csa03g00046 579 SUPERFAMILY Protein kinase-like (PK-like) 272 546 IPR011009 -
Csa03g00046 579 Gene3D Transferase(Phosphotransferase) domain 1 376 577 - -
Csa03g00046 579 Coils Coil 234 254 - -
Csa03g00046 579 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 17 564 - -
Csa03g00046 579 ProSiteProfiles Protein kinase domain profile. 297 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00046 579 SUPERFAMILY ACT-like 182 247 IPR045865 -
Csa03g00046 579 MobiDBLite consensus disorder prediction 134 155 - -
Csa03g00046 579 Gene3D Phosphorylase Kinase; domain 1 287 375 - -
Csa03g00046 579 PRINTS Tyrosine kinase catalytic domain signature 371 384 IPR001245 GO:0004672|GO:0006468
Csa03g00046 579 PRINTS Tyrosine kinase catalytic domain signature 408 426 IPR001245 GO:0004672|GO:0006468
Csa03g00046 579 PRINTS Tyrosine kinase catalytic domain signature 454 464 IPR001245 GO:0004672|GO:0006468
Csa03g00046 579 PRINTS Tyrosine kinase catalytic domain signature 473 495 IPR001245 GO:0004672|GO:0006468
Csa03g00046 579 PRINTS Tyrosine kinase catalytic domain signature 517 539 IPR001245 GO:0004672|GO:0006468
Csa03g00046 579 ProSitePatterns Protein kinases ATP-binding region signature. 303 324 IPR017441 GO:0005524
Csa03g00046 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00046 Csa-Chr3:453919 Csa07g00131 Csa-Chr7:1153965 0 dispersed
Csa06g01870 Csa-Chr6:16863776 Csa03g00046 Csa-Chr3:453919 1.85E-67 dispersed
Csa06g02656 Csa-Chr6:23385603 Csa03g00046 Csa-Chr3:453919 9.66E-65 dispersed
Csa03g00046 Csa-Chr3:453919 Csa01g00844 Csa-Chr1:5290383 1.04E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77944 PF07714 PK_Tyr_Ser-Thr 6.70E-75 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00046 - - csv:101220844 1174.84