Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00054 ATGGATTTCATAGCGAACCCGTTTCGCTTTTCTTCATCTTCCTCCCCTTCCTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGTTGCTATGCGGTTTCTGCGATTCTTGGCAATATCTTGTCTGCGATCTTCACTTTCTTCTTCGCCCTAGTTGGGACTTTGCTTGGAGCCATGACCGGAGCATTGATTGGCCAAGAAACTGAAAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGACGAATCAGGGATTGGGTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGTGGTCGCCTAGTTCGGGAGCGCATCGGTCCGGCCATATTGAGTGCAGTTCAAAGTCAGATGGGTGCTACAGAGACAAGCTTTGACGACATCCCAAACATCTTCGACACCAGTAGTGCAAAAGGATTGCCTGGGGATTCAGTCGAGAAAATCCCCAAGATCGTAGTATCTAAGAACAATAGTGTAGATGCTTATGGTGAAAGAGTCTGTTGTTCTGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCTTGCATTGATAAATGGCTTCTTACCCATGGCTCTTGCCCTTTATGCAGAAGGGATCTGTAA 708 45.06 MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGATETSFDDIPNIFDTSSAKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 492955 495516 + CsaV3_3G000540.1 Csa03g00054 520959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00054 235 Pfam Ring finger domain 190 232 IPR001841 -
Csa03g00054 235 SMART ring_2 190 231 IPR001841 -
Csa03g00054 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 9 235 - -
Csa03g00054 235 CDD RING-H2_PA-TM-RING 189 232 - -
Csa03g00054 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
Csa03g00054 235 Pfam YMGG-like Gly-zipper 49 85 IPR027367 -
Csa03g00054 235 SUPERFAMILY RING/U-box 176 235 - -
Csa03g00054 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Csa03g00054 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 9 235 IPR044523 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00054 Csa-Chr3:492955 Csa03g01059 Csa-Chr3:8460031 9.99E-17 dispersed
Csa03g00054 Csa-Chr3:492955 Csa04g00658 Csa-Chr4:4416124 9.05E-15 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00054 - - csv:101220376 460.685