Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00055 ATGTTATCAAGCTTGATGAACTTCCTGAGGGCTTGCTGGCAGCCATGTGCCGATGGTCTCTTGCGTCGTGGGGGCAGTGGTTCCGATTCGGTTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGCCACCACATAAATGGAGAATTTTCAATGGCTGTTGTTCAAGCCAACAATTTACTTGAGGATCAGAGTCAGCTTGAGTCTGGTCCCTTGAGCTTGCTTGAGTCTGGACCCTATGGAACCTTTGTAGGAATATACGATGGCCATGGTGGCCCCGAGACATCGCGATTCATATGTGATAACTTGTTCCAGCATCTAAAAGTGTTCGCCGCAGAAGAAAAGGAAATGTCAGTAAATGTGATAAAAAAAGCATTCCAAGCAACAGAAGAGGGTTTTCTCTCTCTTGTCACCAAGCAATGGCCTGTGAACCCTCAGATTGCAGCCGTAGGTTCTTGCTGTCTGGTTGCTGTCATTTGTAATAGTAAACTCTACATTGCCAACCTTGGTGATTCCCGAGCTGTGTTAGGAAGGCTTGTTCGGTCCACAGGAGAAGTTCTTCCCATTCAGCTGTCATCAGAGCACAATGTAAGTATACAATCAGTCCGCCAGGAGATGCAGTCTTTGCACCCAGATGACTCCCAGATAGTAGTGCTGAAGCATAATGTATGGCGCGTAAAGGGCTTGATTCAGATTTCTCGGTCAATCGGAGACGTATATCTCAAAAAGCCAGAATTTAACCGGGAACCTTTGTATACTAAGTTTCGCCTCCGAGAACCCTTCAGTAGACCTATTCTGAGCTCAGAACCAGCAGTTTCTGTGCACGAACTTGATCCAAATGATCAATTTCTTATATTTGCCTCAGATGGGCTGTGGGAGCATCTTAGCAACCAGGATGCAGTTGATATAGTTCACAAGCATCCTCACAGTGGAAGTGCAAGAAGGCTGGTGAAGGCAGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATACTCAGATTTGAAGAAGATTGACCGTGGAGTTCGTCGTCATTTTCACGACGATACAACAGTGATCGTCGTGTTTCTCGGTTCGAGCAGAGGGAGTAATGCTACAGGGGGAGGGAGCCCTGTTTTATCTGTGAGAGGGGGAGGAGTGAACCTATCTGCAAAATCTCTAGCACCTTGA 1173 46.97 MLSSLMNFLRACWQPCADGLLRRGGSGSDSVGCQDGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFVGIYDGHGGPETSRFICDNLFQHLKVFAAEEKEMSVNVIKKAFQATEEGFLSLVTKQWPVNPQIAAVGSCCLVAVICNSKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIQSVRQEMQSLHPDDSQIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYTKFRLREPFSRPILSSEPAVSVHELDPNDQFLIFASDGLWEHLSNQDAVDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSSRGSNATGGGSPVLSVRGGGVNLSAKSLAP* 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 498307 501115 - CsaV3_3G000550.1 Csa03g00055 520960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00055 390 Gene3D - 40 365 IPR036457 -
Csa03g00055 390 PANTHER ALPHABET, ISOFORM E-RELATED 6 386 - -
Csa03g00055 390 Pfam Protein phosphatase 2C 83 327 IPR001932 -
Csa03g00055 390 SMART PP2C_4 42 356 IPR001932 -
Csa03g00055 390 SUPERFAMILY PP2C-like 62 359 IPR036457 -
Csa03g00055 390 CDD PP2Cc 82 358 IPR001932 -
Csa03g00055 390 ProSiteProfiles PPM-type phosphatase domain profile. 50 358 IPR001932 -
Csa03g00055 390 ProSitePatterns PPM-type phosphatase domain signature. 84 92 IPR000222 GO:0043169
Csa03g00055 390 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 6 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01405 Csa-Chr2:13428092 Csa03g00055 Csa-Chr3:498307 0 dispersed
Csa03g00055 Csa-Chr3:498307 Csa05g00646 Csa-Chr5:4308076 4.25E-180 dispersed
Csa03g00055 Csa-Chr3:498307 Csa06g03363 Csa-Chr6:28014814 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00055 K01102 - csv:101220137 769.615