Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00070 ATGTCTACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGTCTTGCAACTTCTCTGAGGAGAAGCACCGCCCCTCATAGCAGAAGAATTTTTCATAGGGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTAACAATACTCACATGGCATTTCACAAAGAGCTACACAGCACAGTCTCTGGACAGTTTAGCATATGGCCTTCGTCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTTTTGAATTCCACATCTGAAATAACCACAGCTCAGGTTAAGCTCTCGGAATATGTGATGAAGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGCTGTATGAATCAATGAGGGACGTTACTTGGGCAATGTTTGCAAGTCGGAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTACAGGCATTCCATCGAGATCATAGAAGCAACAATACTTTTTATATTTACTCAGATCTTGCAAACTATTCTATCAGTGCCACTGAATCACATGATATCAATAGACTTTCGTCAGGTGAAGGGTGGTCAGAGCCATCCATACACGGCAATGTTTCTGCAAAATGGTTCCGGGAACCACTTGATCCTATTAGTGGTGAAAAGATCGGGAAAGCGAGGCAAATCCCACCAGAGGACTTGATTAATATTGCTGGCATTTCACAGGTGGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCGTTGCTTTCTGCAGCTCTGCCTGTTTCTGATGCTTCAAATGAAAGTATAGTTGCAGTGGTGGGCGTTACAACTGCACTTTATAGTGTAGGCCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAGGAGGGCTACTTACTTGCTACTTCGGCCAATGCTCCCCTGTTAAGAAATACATCAAGGGGTCCAAAGCTTACCATGGCTGTTGATTCCCAGGACGACGTAATTCGATTAGGAGCTGAGTGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAAGTCCATGAGGAGAATGTCAAGCTTGGTGATCGGCAATATTACATTGACTCGTTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTTATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTACAAAACATTGGTCATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATTAGCCATCTTGATGCTAGAAGAAGGGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGAACACCAATGGCTGCTGTAATTGGACTGCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTGCCACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTCGACCTGGGACGGGAACTCGAAGGACTTGTTGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAAACTGTATTGGATCTCTCTGACGACATGCCGAAATTCGTTCGAGGAGACTCCGGTCGAGTTGTTCAAATATTCACAAATTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCATATCATTCTTCGAGGGTGGTGTGAGACGTCAAATACTCTTAAAGAAATGGGAAAGTTTTGTATAGATCAGAAGAAGTCACGGTTTCCTAATCGGACAAAGATGAAACAACATGGAGAGCACGCAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGTATCGATTCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCTTCCACAACCCGAACGCATGGTGGCACAGGTCTTGGACTATGCATCGTACGTACCCTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCAGGAACTCTAATGAGATTTTATTTGGTTCTCAGCACGCCTGTAGACTCCACAGATCATCACTGTCAATTTGATTTTGCAAAACATAATGCGGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACATCACAGTGGCTTCGTAAAGTTGGACTGTTCACTTTAGAGGCTTCAGAGTGGAACGAACTAACACTAATCCTTCAAGAACTCTTTCAACCCAGAAGTAACGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACTTTACGAGCTGAGTTAATGAGAATTAAGGATATGAAAAGCCAAGTATTCATCATTGTTGCCGACATCGGGATACTGGACTTGAGCACAGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGGAAAGCAAAATTTGCCTGGATGTTAAACCACGATACGTCCAATGCCATAAAGATGGAGCTCAGGGGAAAAGGGCACATTATAATGAACAATAAGCCACTGTACAGATCGAAGATGATTCATATTTTAGAAGCTGTTATGAAAGACAGAAATCTTGAGTTGCAGAGGAAAAATGCTTTAAGAAATGTATCGAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATGTATTTGAACTTGGGAATTCTAACTCTCAGTGTGCAATTCAAGTCAGAGATGGCCAAGAAGAAACGACAATGAAACCATGTCAGTCATCATTTCTGCCCATTAAGAATAGTTTAGTCGAGTTAACTCATGTACATTCGATCGAGGGTAATGTGAAGACCAGCGATCAGTATGACGTGAGACAAAACTCATCAATGTCTCAATGTCAAAGTTCTGAATCCAACGAACAGAACTTAGGATCCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAATAACGTCCAAGGTAAGAAGTCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAAAGAGTAACAACCATAATGCTCGAAAGGATGGGAGCCAAGGTCATTGCTTTCGGAGACGGATTGCAGGCTGTTGAAGCTCTGACTGCCATGCTCAGTGCCGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGTGGGAACAAGCCTTCACATTCCGATCGTAGCATTGACAGCCCATGCAATGTCGTCAGATGAAGCCAAATGCTTGGAAGTAGGAATGGATGCATACCTAACAAAGCCAATTGACTATAAACTGATGGAGTAG 3567 41.97 MSTPLRKVFCRISGLATSLRRSTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTSEITTAQVKLSEYVMKKYSKPVNQAEQVELYESMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATESHDINRLSSGEGWSEPSIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLTMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDRQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKFVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKFCIDQKKSRFPNRTKMKQHGEHAKNAFKKDNKMTLWFELDDTGCGIDSSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRFYLVLSTPVDSTDHHCQFDFAKHNAVVLLALRGSMSRLITSQWLRKVGLFTLEASEWNELTLILQELFQPRSNENKKGFSPQDSLGETLRAELMRIKDMKSQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNLELQRKNALRNVSKEGDYHECLEIDSTQFETASSDDSDVFELGNSNSQCAIQVRDGQEETTMKPCQSSFLPIKNSLVELTHVHSIEGNVKTSDQYDVRQNSSMSQCQSSESNEQNLGSNYPKSQGESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVEALTAMLSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLME* 1189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 579638 586468 - CsaV3_3G000700.1 Csa03g00070 520975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00070 1188 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Csa03g00070 1188 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Csa03g00070 1188 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Csa03g00070 1188 ProSiteProfiles Response regulatory domain profile. 1065 1188 IPR001789 GO:0000160
Csa03g00070 1188 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Csa03g00070 1188 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1188 - -
Csa03g00070 1188 SMART REC_2 1064 1186 IPR001789 GO:0000160
Csa03g00070 1188 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Csa03g00070 1188 Pfam Response regulator receiver domain 1066 1184 IPR001789 GO:0000160
Csa03g00070 1188 Gene3D - 471 550 - -
Csa03g00070 1188 Gene3D - 551 749 IPR036890 -
Csa03g00070 1188 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 744 IPR036890 -
Csa03g00070 1188 CDD REC_hyHK_CKI1_RcsC-like 1066 1188 - -
Csa03g00070 1188 SMART HKATPase_4 596 748 IPR003594 -
Csa03g00070 1188 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 471 550 IPR036097 GO:0000155|GO:0007165
Csa03g00070 1188 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Csa03g00070 1188 SUPERFAMILY CheY-like 1062 1185 IPR011006 -
Csa03g00070 1188 Gene3D - 1042 1188 - -
Csa03g00070 1188 MobiDBLite consensus disorder prediction 1013 1055 - -
Csa03g00070 1188 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 747 IPR003594 -
Csa03g00070 1188 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Csa03g00070 1188 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00503 Csa-Chr2:3540394 Csa03g00070 Csa-Chr3:579638 9.65E-78 dispersed
Csa03g00070 Csa-Chr3:579638 Csa05g00994 Csa-Chr5:9280299 2.20E-15 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31071 PF02518 HATPase_c 1.20E-22 CL0025 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00070 - - csv:101217761 2320.43