Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00070 ATGTCTACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGTCTTGCAACTTCTCTGAGGAGAAGCACCGCCCCTCATAGCAGAAGAATTTTTCATAGGGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTAACAATACTCACATGGCATTTCACAAAGAGCTACACAGCACAGTCTCTGGACAGTTTAGCATATGGCCTTCGTCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTTTTGAATTCCACATCTGAAATAACCACAGCTCAGGTTAAGCTCTCGGAATATGTGATGAAGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGCTGTATGAATCAATGAGGGACGTTACTTGGGCAATGTTTGCAAGTCGGAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTACAGGCATTCCATCGAGATCATAGAAGCAACAATACTTTTTATATTTACTCAGATCTTGCAAACTATTCTATCAGTGCCACTGAATCACATGATATCAATAGACTTTCGTCAGGTGAAGGGTGGTCAGAGCCATCCATACACGGCAATGTTTCTGCAAAATGGTTCCGGGAACCACTTGATCCTATTAGTGGTGAAAAGATCGGGAAAGCGAGGCAAATCCCACCAGAGGACTTGATTAATATTGCTGGCATTTCACAGGTGGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCGTTGCTTTCTGCAGCTCTGCCTGTTTCTGATGCTTCAAATGAAAGTATAGTTGCAGTGGTGGGCGTTACAACTGCACTTTATAGTGTAGGCCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAGGAGGGCTACTTACTTGCTACTTCGGCCAATGCTCCCCTGTTAAGAAATACATCAAGGGGTCCAAAGCTTACCATGGCTGTTGATTCCCAGGACGACGTAATTCGATTAGGAGCTGAGTGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGTCATGAAGTCCATGAGGAGAATGTCAAGCTTGGTGATCGGCAATATTACATTGACTCGTTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTTATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTACAAAACATTGGTCATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATTAGCCATCTTGATGCTAGAAGAAGGGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAGCTGAGAACACCAATGGCTGCTGTAATTGGACTGCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTGCCACAGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAGTTCGACCTGGGACGGGAACTCGAAGGACTTGTTGATATGTTCTCTGTGCAGTGCATTAACCATAATGTGGAAACTGTATTGGATCTCTCTGACGACATGCCGAAATTCGTTCGAGGAGACTCCGGTCGAGTTGTTCAAATATTCACAAATTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCATATCATTCTTCGAGGGTGGTGTGAGACGTCAAATACTCTTAAAGAAATGGGAAAGTTTTGTATAGATCAGAAGAAGTCACGGTTTCCTAATCGGACAAAGATGAAACAACATGGAGAGCACGCAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGTATCGATTCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCTTCCACAACCCGAACGCATGGTGGCACAGGTCTTGGACTATGCATCGTACGTACCCTGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGCCCAGGAACTCTAATGAGATTTTATTTGGTTCTCAGCACGCCTGTAGACTCCACAGATCATCACTGTCAATTTGATTTTGCAAAACATAATGCGGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACATCACAGTGGCTTCGTAAAGTTGGACTGTTCACTTTAGAGGCTTCAGAGTGGAACGAACTAACACTAATCCTTCAAGAACTCTTTCAACCCAGAAGTAACGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACTTTACGAGCTGAGTTAATGAGAATTAAGGATATGAAAAGCCAAGTATTCATCATTGTTGCCGACATCGGGATACTGGACTTGAGCACAGATATTTGGAAGGACCAACTTTACTTCCTTGACAAGTACTCTGGGAAAGCAAAATTTGCCTGGATGTTAAACCACGATACGTCCAATGCCATAAAGATGGAGCTCAGGGGAAAAGGGCACATTATAATGAACAATAAGCCACTGTACAGATCGAAGATGATTCATATTTTAGAAGCTGTTATGAAAGACAGAAATCTTGAGTTGCAGAGGAAAAATGCTTTAAGAAATGTATCGAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATGTATTTGAACTTGGGAATTCTAACTCTCAGTGTGCAATTCAAGTCAGAGATGGCCAAGAAGAAACGACAATGAAACCATGTCAGTCATCATTTCTGCCCATTAAGAATAGTTTAGTCGAGTTAACTCATGTACATTCGATCGAGGGTAATGTGAAGACCAGCGATCAGTATGACGTGAGACAAAACTCATCAATGTCTCAATGTCAAAGTTCTGAATCCAACGAACAGAACTTAGGATCCAACTATCCTAAAAGCCAAGGAGAATCACATTCTAATAACGTCCAAGGTAAGAAGTCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCAGTTCTCCAAAGAGTAACAACCATAATGCTCGAAAGGATGGGAGCCAAGGTCATTGCTTTCGGAGACGGATTGCAGGCTGTTGAAGCTCTGACTGCCATGCTCAGTGCCGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAGATGGATGGCTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGTGGGAACAAGCCTTCACATTCCGATCGTAGCATTGACAGCCCATGCAATGTCGTCAGATGAAGCCAAATGCTTGGAAGTAGGAATGGATGCATACCTAACAAAGCCAATTGACTATAAACTGATGGAGTAG 3567 41.97 MSTPLRKVFCRISGLATSLRRSTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTSEITTAQVKLSEYVMKKYSKPVNQAEQVELYESMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATESHDINRLSSGEGWSEPSIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSRGPKLTMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDRQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKFVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKFCIDQKKSRFPNRTKMKQHGEHAKNAFKKDNKMTLWFELDDTGCGIDSSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRFYLVLSTPVDSTDHHCQFDFAKHNAVVLLALRGSMSRLITSQWLRKVGLFTLEASEWNELTLILQELFQPRSNENKKGFSPQDSLGETLRAELMRIKDMKSQVFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNLELQRKNALRNVSKEGDYHECLEIDSTQFETASSDDSDVFELGNSNSQCAIQVRDGQEETTMKPCQSSFLPIKNSLVELTHVHSIEGNVKTSDQYDVRQNSSMSQCQSSESNEQNLGSNYPKSQGESHSNNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGAKVIAFGDGLQAVEALTAMLSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLME* 1189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 579638 586468 - CsaV3_3G000700.1 Csa03g00070 520975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00070 1188 PRINTS Bacterial sensor protein C-terminal signature 673 687 IPR004358 GO:0016310|GO:0016772
Csa03g00070 1188 PRINTS Bacterial sensor protein C-terminal signature 691 701 IPR004358 GO:0016310|GO:0016772
Csa03g00070 1188 PRINTS Bacterial sensor protein C-terminal signature 708 726 IPR004358 GO:0016310|GO:0016772
Csa03g00070 1188 ProSiteProfiles Response regulatory domain profile. 1065 1188 IPR001789 GO:0000160
Csa03g00070 1188 ProSiteProfiles Histidine kinase domain profile. 490 748 IPR005467 -
Csa03g00070 1188 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1188 - -
Csa03g00070 1188 SMART REC_2 1064 1186 IPR001789 GO:0000160
Csa03g00070 1188 CDD HisKA 484 545 IPR003661 GO:0000155|GO:0007165
Csa03g00070 1188 Pfam Response regulator receiver domain 1066 1184 IPR001789 GO:0000160
Csa03g00070 1188 Gene3D - 471 550 - -
Csa03g00070 1188 Gene3D - 551 749 IPR036890 -
Csa03g00070 1188 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 538 744 IPR036890 -
Csa03g00070 1188 CDD REC_hyHK_CKI1_RcsC-like 1066 1188 - -
Csa03g00070 1188 SMART HKATPase_4 596 748 IPR003594 -
Csa03g00070 1188 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 471 550 IPR036097 GO:0000155|GO:0007165
Csa03g00070 1188 SMART HisKA_10 483 549 IPR003661 GO:0000155|GO:0007165
Csa03g00070 1188 SUPERFAMILY CheY-like 1062 1185 IPR011006 -
Csa03g00070 1188 Gene3D - 1042 1188 - -
Csa03g00070 1188 MobiDBLite consensus disorder prediction 1013 1055 - -
Csa03g00070 1188 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 596 747 IPR003594 -
Csa03g00070 1188 Pfam His Kinase A (phospho-acceptor) domain 484 549 IPR003661 GO:0000155|GO:0007165
Csa03g00070 1188 PANTHER OSMOSENSOR HISTIDINE KINASE 1 1188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00070 - - - csv:101217761 2320.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00503 Csa-Chr2:3540394 Csa03g00070 Csa-Chr3:579638 9.65E-78 dispersed
Csa03g00070 Csa-Chr3:579638 Csa05g00994 Csa-Chr5:9280299 2.20E-15 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00070 . 5 1187 Histidine Kinase Gene Family AT2G17820 65.2 0.0e+00 1443.3
Csa05g01966 CCT 24 987 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1332.8
Csa05g00994 CCT 3 953 Histidine Kinase Gene Family AT2G01830 72.3 0.0e+00 1307.0
Csa06g00827 . 58 1002 Histidine Kinase Gene Family AT2G01830 53.5 3.1e-276 948.3
Csa06g00945 . 304 1259 Histidine Kinase Gene Family AT2G01830 51.8 3.1e-268 921.8
Csa04g02603 . 1 993 Histidine Kinase Gene Family AT5G10720 57.5 1.5e-290 995.7
Csa06g02224 . 1 1120 Histidine Kinase Gene Family AT1G09570 80.1 0.0e+00 1832.0
Csa06g02220 . 3 1145 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1620.5
Csa07g00253 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.3 0.0e+00 1214.9
Csa03g01519 . 34 1121 Histidine Kinase Gene Family AT1G09570 54.7 0.0e+00 1196.4
Csa03g01519 . 13 1062 Histidine Kinase Gene Family AT2G18790 78.9 0.0e+00 1670.6
Csa01g02269 . 9 925 Histidine Kinase Gene Family AT2G18790 61.4 0.0e+00 1155.2
Csa06g02224 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1087.0
Csa07g00253 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.2 1.0e-313 1072.8
Csa06g02220 . 22 1049 Histidine Kinase Gene Family AT2G18790 52.1 4.3e-308 1054.3
Csa07g00253 . 18 1114 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1373.2
Csa03g01519 . 21 1123 Histidine Kinase Gene Family AT5G35840 53.3 0.0e+00 1153.3
Csa06g02224 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.8
Csa03g01519 . 3 1123 Histidine Kinase Gene Family AT4G16250 76.0 0.0e+00 1715.3
Csa01g02269 . 9 987 Histidine Kinase Gene Family AT4G16250 58.7 0.0e+00 1192.2
Csa06g02224 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1136.7
Csa07g00253 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1114.8
Csa01g02269 . 6 988 Histidine Kinase Gene Family AT4G18130 65.2 0.0e+00 1287.3
Csa03g01519 . 38 1121 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1273.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31071 PF02518 HATPase_c 1.20E-22 CL0025 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00070 Csa_Chr03 FPKM 120.946777 133.046631 107.584473 96.685432 119.303978 149.225586 97.810478 107.947304 111.084839 107.324043