Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00090 ATGGGCATGATGGGTGGACGACAAAGGACCTACACCGCTAATTCCACTGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCTACTGTTTTTAGAGCGATCTATACTCCCTCGAATGAAGTCGTCGCCATCAAGTGTTTGGATCTTGATCGCTGCAATAGTAATCTTGATGATATACGGAGGGAGGCTCAAACAATGAGTTTGATAGATCATCCAAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATGAAGACAGCATACACAGATGGCTTTGAAGAGGTTGCTATTGGTTCTATCCTGAAAGAGACTCTTAAAGCTTTGGAGTACCTGCATCGTCAAGGACACATACATCGGGATGTGAAGGCTGGAAACATACTACTTGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGCTCCAGAAATACCTTTGTGGGAACTCCATGCTGGATGGCACCAGAGGTATTGCAACCAGGAACGGGATATAATTCCAAGGCTGATATTTGGTCCTTTGGTATTACAGCTTTGGAGTTGGCTCATGGTCATGCACCGTTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAACGGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAGCCAAGAGGCCAACAGCTGAAAAACTTATAAAGCACTCCTTTTTCAAGAATGCCAAGCCTCCAGAGGTTTCTTTGAAGAAACTATTCGCTAATTTGCCTCCTCTTTCACATCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCACTGTCGCAGAGCGAGTACCAGCGAGGAGTAAGTGCGTGGAACTTTGATGTTGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAGGAGGAGGAGAATATAAATTCTTGTAGTGTTAAGGATGCCTTCTATCCTCGATCTATTTTGAGGAATTTCAATTCGTGTAATGAATCATCTCAGGATGAACATGGAGTAGGAGCAAGTGGTCAGGGATTGTCACAAGTAGAGTGCTTGAACAAAAGGGGAAACTTTGTGGAAAGTGATGCTCTGAAAGCAGGGTTGCAAGAAAAAACTGGAAAGAGAAATGGAACTAGCACTGAAGCAGAAGCTTCTACGTCTGGCCAAGACATTGTACAAGGCAAGACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTTTACCTGGCATTGTGCTCAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTGCTGAAAAAAATCGCCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGCGCCTCAGCAAACAGCCTATCAGCACCCATAAAACCTTCTGGAGGGTTTAGAGATTCAATGGACGACAAATCCAAAGCTAATCTTGTACAAATTAAGGGGCGTTTTTCAGTGACGTCAGAGAACCTAGATCTTGTAAAGGATATTCCATTGAGCACAGTTTCACGTCGGTCTTCACAGAACTCTCCTCTACGAAAGTCGGCTAGTGTTGGTGATTGGATTTTCGATTCCAAGCAGTCTGTCAGCCAACCCCCTAAGGATGCTTCCAACACGAACATGTCCACATCAGTTCTTCTGCCTCATCTTCAGAATCTTTTCCATCAGACCTCGATTCAACAGGATCTTATCGTGAACTTGTTGAATAGCTTACAAACAGCAGACGTGGTTGATGCTACTCAAAATGGAAAGTTACCTCCATTGCCCCGAAGCTCAGAGAATAATGGAAGTGCTGAAACAGCGGCAGTTGAGAGAGAGCGTTTACTTTTGCGGAAAGTCTCTGAACTTCAAGCTAGAATGACGCATTTGACTTATGAATTGACCGCTGAAAAGTTGAAATACATTCAATTACAAGAGCAGTTCAACTCGGCATCTGGTCAGGAAGAAAATGAGATCAAGAGGGAAGAAAATGTCTAA 2190 43.61 MGMMGGRQRTYTANSTDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTAYTDGFEEVAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQAKRPTAEKLIKHSFFKNAKPPEVSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEENINSCSVKDAFYPRSILRNFNSCNESSQDEHGVGASGQGLSQVECLNKRGNFVESDALKAGLQEKTGKRNGTSTEAEASTSGQDIVQGKTKTQMPKGRQTQSGPLLPGIVLSHSLSERVRGSERFDSEIQPSAEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQNSPLRKSASVGDWIFDSKQSVSQPPKDASNTNMSTSVLLPHLQNLFHQTSIQQDLIVNLLNSLQTADVVDATQNGKLPPLPRSSENNGSAETAAVERERLLLRKVSELQARMTHLTYELTAEKLKYIQLQEQFNSASGQEENEIKREENV* 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 709022 719765 + CsaV3_3G000900.1 Csa03g00090 520995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00090 729 SMART serkin_6 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00090 729 MobiDBLite consensus disorder prediction 425 520 - -
Csa03g00090 729 CDD STKc_OSR1_SPAK 17 279 - -
Csa03g00090 729 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00090 729 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Csa03g00090 729 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 721 - -
Csa03g00090 729 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Csa03g00090 729 MobiDBLite consensus disorder prediction 431 465 - -
Csa03g00090 729 Coils Coil 343 363 - -
Csa03g00090 729 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 721 - -
Csa03g00090 729 MobiDBLite consensus disorder prediction 482 506 - -
Csa03g00090 729 SUPERFAMILY Protein kinase-like (PK-like) 17 335 IPR011009 -
Csa03g00090 729 Gene3D Transferase(Phosphotransferase) domain 1 99 330 - -
Csa03g00090 729 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00090 - - - csv:101213683 1428.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00090 Csa-Chr3:709022 Csa05g01916 Csa-Chr5:22320443 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa04g02327 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G53165 62.8 5.8e-223 770.8
Csa05g01193 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.1e-67 253.4
Csa04g02327 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 64.4 1.0e-230 796.6
Csa05g01193 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.4e-67 254.6
Csa05g01193 . 4 830 MAP Kinase Kinase Kinase Kinase AT1G69220 59.0 2.1e-240 828.9
Csa04g02327 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.4 6.3e-67 252.7
Csa05g01916 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.8 5.7e-255 877.1
Csa03g00090 . 7 719 MAP Kinase Kinase Kinase Kinase AT4G24100 64.3 3.0e-246 848.2
Csa03g00090 . 11 720 MAP Kinase Kinase Kinase Kinase AT4G10730 64.8 3.8e-246 847.8
Csa03g02963 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 61.7 2.1e-131 466.5
Csa03g00090 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 1.5e-118 423.7
Csa03g02963 . 1 680 MAP Kinase Kinase Kinase Kinase AT1G79640 58.7 6.2e-214 740.7
Csa05g01916 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 1.6e-102 370.2
Csa03g02963 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 7.3e-87 318.2
Csa03g00090 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.9 8.3e-75 278.1
Csa03g01242 . 32 497 MAP Kinase Kinase Kinase Kinase AT4G14480 57.1 2.6e-140 495.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77945 PF00069 Pkinase 1.20E-60 CL0016 Csa PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00090 Csa_Chr03 FPKM 4.104043 4.470766 11.240811 10.041434 66.607903 69.284416 70.932526 15.145095 15.1507 16.159527