Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00090 ATGGGCATGATGGGTGGACGACAAAGGACCTACACCGCTAATTCCACTGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCTACTGTTTTTAGAGCGATCTATACTCCCTCGAATGAAGTCGTCGCCATCAAGTGTTTGGATCTTGATCGCTGCAATAGTAATCTTGATGATATACGGAGGGAGGCTCAAACAATGAGTTTGATAGATCATCCAAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATGAAGACAGCATACACAGATGGCTTTGAAGAGGTTGCTATTGGTTCTATCCTGAAAGAGACTCTTAAAGCTTTGGAGTACCTGCATCGTCAAGGACACATACATCGGGATGTGAAGGCTGGAAACATACTACTTGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGCTCCAGAAATACCTTTGTGGGAACTCCATGCTGGATGGCACCAGAGGTATTGCAACCAGGAACGGGATATAATTCCAAGGCTGATATTTGGTCCTTTGGTATTACAGCTTTGGAGTTGGCTCATGGTCATGCACCGTTTTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAACGGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAGCCAAGAGGCCAACAGCTGAAAAACTTATAAAGCACTCCTTTTTCAAGAATGCCAAGCCTCCAGAGGTTTCTTTGAAGAAACTATTCGCTAATTTGCCTCCTCTTTCACATCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCACTGTCGCAGAGCGAGTACCAGCGAGGAGTAAGTGCGTGGAACTTTGATGTTGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAGGAGGAGGAGAATATAAATTCTTGTAGTGTTAAGGATGCCTTCTATCCTCGATCTATTTTGAGGAATTTCAATTCGTGTAATGAATCATCTCAGGATGAACATGGAGTAGGAGCAAGTGGTCAGGGATTGTCACAAGTAGAGTGCTTGAACAAAAGGGGAAACTTTGTGGAAAGTGATGCTCTGAAAGCAGGGTTGCAAGAAAAAACTGGAAAGAGAAATGGAACTAGCACTGAAGCAGAAGCTTCTACGTCTGGCCAAGACATTGTACAAGGCAAGACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTTTACCTGGCATTGTGCTCAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTGCTGAAAAAAATCGCCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGCGCCTCAGCAAACAGCCTATCAGCACCCATAAAACCTTCTGGAGGGTTTAGAGATTCAATGGACGACAAATCCAAAGCTAATCTTGTACAAATTAAGGGGCGTTTTTCAGTGACGTCAGAGAACCTAGATCTTGTAAAGGATATTCCATTGAGCACAGTTTCACGTCGGTCTTCACAGAACTCTCCTCTACGAAAGTCGGCTAGTGTTGGTGATTGGATTTTCGATTCCAAGCAGTCTGTCAGCCAACCCCCTAAGGATGCTTCCAACACGAACATGTCCACATCAGTTCTTCTGCCTCATCTTCAGAATCTTTTCCATCAGACCTCGATTCAACAGGATCTTATCGTGAACTTGTTGAATAGCTTACAAACAGCAGACGTGGTTGATGCTACTCAAAATGGAAAGTTACCTCCATTGCCCCGAAGCTCAGAGAATAATGGAAGTGCTGAAACAGCGGCAGTTGAGAGAGAGCGTTTACTTTTGCGGAAAGTCTCTGAACTTCAAGCTAGAATGACGCATTTGACTTATGAATTGACCGCTGAAAAGTTGAAATACATTCAATTACAAGAGCAGTTCAACTCGGCATCTGGTCAGGAAGAAAATGAGATCAAGAGGGAAGAAAATGTCTAA 2190 43.61 MGMMGGRQRTYTANSTDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTAYTDGFEEVAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQAKRPTAEKLIKHSFFKNAKPPEVSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEENINSCSVKDAFYPRSILRNFNSCNESSQDEHGVGASGQGLSQVECLNKRGNFVESDALKAGLQEKTGKRNGTSTEAEASTSGQDIVQGKTKTQMPKGRQTQSGPLLPGIVLSHSLSERVRGSERFDSEIQPSAEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQNSPLRKSASVGDWIFDSKQSVSQPPKDASNTNMSTSVLLPHLQNLFHQTSIQQDLIVNLLNSLQTADVVDATQNGKLPPLPRSSENNGSAETAAVERERLLLRKVSELQARMTHLTYELTAEKLKYIQLQEQFNSASGQEENEIKREENV* 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 709022 719765 + CsaV3_3G000900.1 Csa03g00090 520995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00090 729 SMART serkin_6 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00090 729 MobiDBLite consensus disorder prediction 425 520 - -
Csa03g00090 729 CDD STKc_OSR1_SPAK 17 279 - -
Csa03g00090 729 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00090 729 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Csa03g00090 729 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 721 - -
Csa03g00090 729 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Csa03g00090 729 MobiDBLite consensus disorder prediction 431 465 - -
Csa03g00090 729 Coils Coil 343 363 - -
Csa03g00090 729 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 721 - -
Csa03g00090 729 MobiDBLite consensus disorder prediction 482 506 - -
Csa03g00090 729 SUPERFAMILY Protein kinase-like (PK-like) 17 335 IPR011009 -
Csa03g00090 729 Gene3D Transferase(Phosphotransferase) domain 1 99 330 - -
Csa03g00090 729 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00090 Csa-Chr3:709022 Csa05g01916 Csa-Chr5:22320443 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77945 PF00069 Pkinase 1.20E-60 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00090 - - csv:101213683 1428.69