Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00099 ATGGCTACCATGTCTCACTCTCTTCTTTCTCTCCTCCTCTCCTTCCCTTTCTTCTTTTTAGGTGGAAATTCAACGACTTTTACTATTTTAAATCAGTGTGATTACACGGTGTGGCCGGGACTTTTGTCCGGCGCCGGCACATCACAGCTCTCCACTACCGGCTTCGTTCTTGAGAAAGGACAGTCCAACCCCATCACCATCCCGCCGGGGTGGTCCGGCCGCATTTGGGGCCGCACTTATTGCTCCCATGATGCCACCGGCAGATTCACTTGCGCCACTGCCGACTGCGGCTCCGGCACTGTTGAATGCAACGGTAAGGGTGCTGTCCCGCCCGCCACCCTTGCCGAGTTCACTCTCAATGGTGCGAATGGGCTCGATTTCTACGATGTCAGCCTCGTCGATGGCTACAATGTGCCCATGTTAATCACCCCACAAGATGGAACAGGTGGGGGAAATTGCACAACAACTGGATGTGCAACAGATTTAAACAGCGAATGTCCGTCAGAACTAAGAGTGGCAGCGAGCGACGGAAATGAAAAAAGTGTAGCGTGTAAAAGCGCATGTGAGGCTTTTGGTGACGCACAATACTGTTGTAGTGGTGAATATGGTAGTCCAAATACTTGTGGACCGTCATCTTATTCACAGTTCTTCAAATCCTCATGTCCACAAGCTTATAGCTATGCCTACGACGACGGTACCAGCACATTCACTTGCACTGCCGCCAATTACCTCATCACCTTTTGTCCCCTTTCAGATAGAAACGCACAATCCCCAAAGGGAGTGGACAGCTCAAGAACCGAGCGTTCGGGCAGACCGTCGTTGATCGTAGCCGTTATCTCCATGGTGATGGCAGCTCTAAGTACTGGAAATTCAGCAACTTTTACCATTTTAAATCAATGTGCTTACACGGTGTGGCCGGGACTTTCTTCCGGCGCCGACTCACCACAGCTCTCCACTACCGGCTTTGTTCTTGAGGTAGGAAAGTCCAACGCCATCACCATCCCGTCGGGGTGGTCCGGCCGCATTTGGGCCCGCACTTATTGCTCCCAAGATTCCACCGGCAGATTCACTTGTGCCACTGCCGACTGCGGCTCCCGCACTATTGACTGCAAAGGTAAGGGTGCTACCCCGCCCGCCACCTTTGCCGAGATCACTCTCAATGGTTTGGATGGGCTCGATTTCTACGATATCAGCCTCGTTGATGGCTACAATTTGCCCATCTCAATTACTCCCCAAAATGGAACAGAAATTGGTGGAGGAAATTGCCCAACAGTTGAATGTGCAAAAGATATAAACAGCCATTGTCCAGCAAAACTAAGACTGACGGATAGGGACGGAAGTGGAAAAGGTGTAGCATGTAAAAGCGCATGTGAGGCTTTTGGTGATGCAAAATACTGTTGTAGTGATGAATTTGGTAGTCCAGATACTTGTAAACCCTCATCTTATTCACAGTTCTTCAAATCCGCATGTCCTCGTGCTTATACGTATGCCTACGAAGACGGTAACACTTTCGGTTGCAATGGTGCCAATTACCTCATCACCTTTTGTCCTTCTCCACATTGGTGA 1566 50.06 MATMSHSLLSLLLSFPFFFLGGNSTTFTILNQCDYTVWPGLLSGAGTSQLSTTGFVLEKGQSNPITIPPGWSGRIWGRTYCSHDATGRFTCATADCGSGTVECNGKGAVPPATLAEFTLNGANGLDFYDVSLVDGYNVPMLITPQDGTGGGNCTTTGCATDLNSECPSELRVAASDGNEKSVACKSACEAFGDAQYCCSGEYGSPNTCGPSSYSQFFKSSCPQAYSYAYDDGTSTFTCTAANYLITFCPLSDRNAQSPKGVDSSRTERSGRPSLIVAVISMVMAALSTGNSATFTILNQCAYTVWPGLSSGADSPQLSTTGFVLEVGKSNAITIPSGWSGRIWARTYCSQDSTGRFTCATADCGSRTIDCKGKGATPPATFAEITLNGLDGLDFYDISLVDGYNLPISITPQNGTEIGGGNCPTVECAKDINSHCPAKLRLTDRDGSGKGVACKSACEAFGDAKYCCSDEFGSPDTCKPSSYSQFFKSACPRAYTYAYEDGNTFGCNGANYLITFCPSPHW* 522
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 781308 786015 + CsaV3_3G000990.1 Csa03g00099 521004
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00099 521 PANTHER OS03G0233200 PROTEIN 278 519 IPR001938 -
Csa03g00099 521 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Csa03g00099 521 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Csa03g00099 521 PRINTS Pathogenesis-related protein signature 239 248 IPR001938 -
Csa03g00099 521 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Csa03g00099 521 SUPERFAMILY Osmotin, thaumatin-like protein 25 249 IPR037176 -
Csa03g00099 521 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Csa03g00099 521 PANTHER OS09G0536300 PROTEIN 2 258 - -
Csa03g00099 521 CDD TLP-PA 293 516 - -
Csa03g00099 521 PANTHER OS09G0536300 PROTEIN 278 519 - -
Csa03g00099 521 ProSiteProfiles Thaumatin family profile. 291 517 IPR001938 -
Csa03g00099 521 SUPERFAMILY Osmotin, thaumatin-like protein 292 518 IPR037176 -
Csa03g00099 521 SMART tha2 294 517 IPR001938 -
Csa03g00099 521 SMART tha2 27 249 IPR001938 -
Csa03g00099 521 Gene3D Thaumatin 25 249 IPR037176 -
Csa03g00099 521 Gene3D Thaumatin 292 517 IPR037176 -
Csa03g00099 521 ProSiteProfiles Thaumatin family profile. 24 249 IPR001938 -
Csa03g00099 521 CDD TLP-PA 26 248 - -
Csa03g00099 521 Pfam Thaumatin family 31 249 IPR001938 -
Csa03g00099 521 Pfam Thaumatin family 298 517 IPR001938 -
Csa03g00099 521 PANTHER OS03G0233200 PROTEIN 2 258 IPR001938 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00075 Csa-Chr3:614891 Csa03g00099 Csa-Chr3:781308 3.51E-122 dispersed
Csa03g00099 Csa-Chr3:781308 Csa06g03333 Csa-Chr6:27851431 1.78E-80 dispersed
Csa03g00099 Csa-Chr3:781308 Csa03g04288 Csa-Chr3:37543700 5.25E-95 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00099 - - lang:109331061 607.831