Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00099 | ATGGCTACCATGTCTCACTCTCTTCTTTCTCTCCTCCTCTCCTTCCCTTTCTTCTTTTTAGGTGGAAATTCAACGACTTTTACTATTTTAAATCAGTGTGATTACACGGTGTGGCCGGGACTTTTGTCCGGCGCCGGCACATCACAGCTCTCCACTACCGGCTTCGTTCTTGAGAAAGGACAGTCCAACCCCATCACCATCCCGCCGGGGTGGTCCGGCCGCATTTGGGGCCGCACTTATTGCTCCCATGATGCCACCGGCAGATTCACTTGCGCCACTGCCGACTGCGGCTCCGGCACTGTTGAATGCAACGGTAAGGGTGCTGTCCCGCCCGCCACCCTTGCCGAGTTCACTCTCAATGGTGCGAATGGGCTCGATTTCTACGATGTCAGCCTCGTCGATGGCTACAATGTGCCCATGTTAATCACCCCACAAGATGGAACAGGTGGGGGAAATTGCACAACAACTGGATGTGCAACAGATTTAAACAGCGAATGTCCGTCAGAACTAAGAGTGGCAGCGAGCGACGGAAATGAAAAAAGTGTAGCGTGTAAAAGCGCATGTGAGGCTTTTGGTGACGCACAATACTGTTGTAGTGGTGAATATGGTAGTCCAAATACTTGTGGACCGTCATCTTATTCACAGTTCTTCAAATCCTCATGTCCACAAGCTTATAGCTATGCCTACGACGACGGTACCAGCACATTCACTTGCACTGCCGCCAATTACCTCATCACCTTTTGTCCCCTTTCAGATAGAAACGCACAATCCCCAAAGGGAGTGGACAGCTCAAGAACCGAGCGTTCGGGCAGACCGTCGTTGATCGTAGCCGTTATCTCCATGGTGATGGCAGCTCTAAGTACTGGAAATTCAGCAACTTTTACCATTTTAAATCAATGTGCTTACACGGTGTGGCCGGGACTTTCTTCCGGCGCCGACTCACCACAGCTCTCCACTACCGGCTTTGTTCTTGAGGTAGGAAAGTCCAACGCCATCACCATCCCGTCGGGGTGGTCCGGCCGCATTTGGGCCCGCACTTATTGCTCCCAAGATTCCACCGGCAGATTCACTTGTGCCACTGCCGACTGCGGCTCCCGCACTATTGACTGCAAAGGTAAGGGTGCTACCCCGCCCGCCACCTTTGCCGAGATCACTCTCAATGGTTTGGATGGGCTCGATTTCTACGATATCAGCCTCGTTGATGGCTACAATTTGCCCATCTCAATTACTCCCCAAAATGGAACAGAAATTGGTGGAGGAAATTGCCCAACAGTTGAATGTGCAAAAGATATAAACAGCCATTGTCCAGCAAAACTAAGACTGACGGATAGGGACGGAAGTGGAAAAGGTGTAGCATGTAAAAGCGCATGTGAGGCTTTTGGTGATGCAAAATACTGTTGTAGTGATGAATTTGGTAGTCCAGATACTTGTAAACCCTCATCTTATTCACAGTTCTTCAAATCCGCATGTCCTCGTGCTTATACGTATGCCTACGAAGACGGTAACACTTTCGGTTGCAATGGTGCCAATTACCTCATCACCTTTTGTCCTTCTCCACATTGGTGA | 1566 | 50.06 | MATMSHSLLSLLLSFPFFFLGGNSTTFTILNQCDYTVWPGLLSGAGTSQLSTTGFVLEKGQSNPITIPPGWSGRIWGRTYCSHDATGRFTCATADCGSGTVECNGKGAVPPATLAEFTLNGANGLDFYDVSLVDGYNVPMLITPQDGTGGGNCTTTGCATDLNSECPSELRVAASDGNEKSVACKSACEAFGDAQYCCSGEYGSPNTCGPSSYSQFFKSSCPQAYSYAYDDGTSTFTCTAANYLITFCPLSDRNAQSPKGVDSSRTERSGRPSLIVAVISMVMAALSTGNSATFTILNQCAYTVWPGLSSGADSPQLSTTGFVLEVGKSNAITIPSGWSGRIWARTYCSQDSTGRFTCATADCGSRTIDCKGKGATPPATFAEITLNGLDGLDFYDISLVDGYNLPISITPQNGTEIGGGNCPTVECAKDINSHCPAKLRLTDRDGSGKGVACKSACEAFGDAKYCCSDEFGSPDTCKPSSYSQFFKSACPRAYTYAYEDGNTFGCNGANYLITFCPSPHW* | 522 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 781308 | 786015 | + | CsaV3_3G000990.1 | Csa03g00099 | 521004 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00099 | 521 | PANTHER | OS03G0233200 PROTEIN | 278 | 519 | IPR001938 | - | |
Csa03g00099 | 521 | PRINTS | Pathogenesis-related protein signature | 26 | 38 | IPR001938 | - | |
Csa03g00099 | 521 | PRINTS | Pathogenesis-related protein signature | 74 | 85 | IPR001938 | - | |
Csa03g00099 | 521 | PRINTS | Pathogenesis-related protein signature | 239 | 248 | IPR001938 | - | |
Csa03g00099 | 521 | PRINTS | Pathogenesis-related protein signature | 126 | 142 | IPR001938 | - | |
Csa03g00099 | 521 | SUPERFAMILY | Osmotin, thaumatin-like protein | 25 | 249 | IPR037176 | - | |
Csa03g00099 | 521 | ProSitePatterns | Thaumatin family signature. | 87 | 103 | IPR017949 | - | |
Csa03g00099 | 521 | PANTHER | OS09G0536300 PROTEIN | 2 | 258 | - | - | |
Csa03g00099 | 521 | CDD | TLP-PA | 293 | 516 | - | - | |
Csa03g00099 | 521 | PANTHER | OS09G0536300 PROTEIN | 278 | 519 | - | - | |
Csa03g00099 | 521 | ProSiteProfiles | Thaumatin family profile. | 291 | 517 | IPR001938 | - | |
Csa03g00099 | 521 | SUPERFAMILY | Osmotin, thaumatin-like protein | 292 | 518 | IPR037176 | - | |
Csa03g00099 | 521 | SMART | tha2 | 294 | 517 | IPR001938 | - | |
Csa03g00099 | 521 | SMART | tha2 | 27 | 249 | IPR001938 | - | |
Csa03g00099 | 521 | Gene3D | Thaumatin | 25 | 249 | IPR037176 | - | |
Csa03g00099 | 521 | Gene3D | Thaumatin | 292 | 517 | IPR037176 | - | |
Csa03g00099 | 521 | ProSiteProfiles | Thaumatin family profile. | 24 | 249 | IPR001938 | - | |
Csa03g00099 | 521 | CDD | TLP-PA | 26 | 248 | - | - | |
Csa03g00099 | 521 | Pfam | Thaumatin family | 31 | 249 | IPR001938 | - | |
Csa03g00099 | 521 | Pfam | Thaumatin family | 298 | 517 | IPR001938 | - | |
Csa03g00099 | 521 | PANTHER | OS03G0233200 PROTEIN | 2 | 258 | IPR001938 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00075 | Csa-Chr3:614891 | Csa03g00099 | Csa-Chr3:781308 | 3.51E-122 | dispersed | |
Csa03g00099 | Csa-Chr3:781308 | Csa06g03333 | Csa-Chr6:27851431 | 1.78E-80 | dispersed | |
Csa03g00099 | Csa-Chr3:781308 | Csa03g04288 | Csa-Chr3:37543700 | 5.25E-95 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00099 | - | - | lang:109331061 | 607.831 |