Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00107 ATGGCAGCGTCAATGGCGTCGTCTAAGCTAACGGAAGGAGCAGTGATGGTGATATGCAAGAGGGAATCGTCTGCTGAGACGTTCCAGCCGATTCTACAAGTGATTGATTTGAAATTGGTTAACACTTCGCAACAATCAGGTAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTTCCAGCAAGGAATGCTGGGCACTCAGCTCAACGAATTGGTTAAGTCTGGGAAGTTACAGAAAGGTTCTATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATTGAGTTGGATGTGATAGAGGAAATGTGTGACATTATTGGTGAACCTGTATCAGCCACAAGATCGTCAGCTAATGCATTAAGTGGAAACCCCCTACCCTCTGTGGGGGGTCTGGGGGCTTCACCTGGTAGTGGAATGATTGGTAAGGGAAATGTATCGAGTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACATGTACCACACATGGGATCTTATTCTAATCCTCCTGAGACTGGAAGATTCTCTGCATCAATTGCGCCTCCTTCTTACTCTAAGACAGATTCTGGATCAAGATTTAATGGGCCATCTCCTTTAACTGGATCATATGGTGATCAGAAGATGGCATATCACAACAGCGGGTCAGATATTCCCAGGCCACCTCTAAATTCTAATGCCTATGCCCGTCCTCAGCCAATATATCAGCAGCCTCCTTCAATGTACAGTAACAGAGGACCAATAGCAAAAAATGAAGCTGCCCCAAGGATAATGCCTATTTCTGCTCTGAACCCTTACCAAGGTAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAACAATCCTCGTGGTGACGGGAAAGTATTTTCATTTGATTTACTCGATGCTTACCGTGGAGAAATACGAGTAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAAATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCCTGAAACCTGCTCAAAAGAACTTTAACCATCTCAAAAATGACTATGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAGCAGCAGTTTCATTTCCATCAGATTGGTGAGATTGAAGGCATGGACAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCCATTAATCCTGCAACTTCTTTGATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGGAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCGGGGTTGTTCCCAGTTTTGGCCGTGAAATCTAGTAGAGTAAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAAGTCAGCTCTTTATAGAGCCAGATTTCCCCGAGGCTCATTCACTGAGAGAGTGGTTTGAAAGGGAAGGGAGGAGTACTCTTTCTGTCTCTATATCCAGGGAAGTTGCTAGTGTGGGTAGGACAGATGTCAGGAAGACCATATCTCAAATTAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTTGACAGTTTCTGCTACACAGCATGTCCTATCATGATCGGGGACCGACAATGTAGCAAAAAAGTTACAAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTCCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCCTTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAGTATGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGGAAGGTTCTTTTTACAAAATTTATAATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGATCAACAGTGGTAAAAGCAGAAAGCATTAATTTTTCAAGCGAATCCAGGTTTCTTCTAAATTTGATGGAAAAACTCAAGCCAGAGAACAGTAGTTCTGCTACCCCAAAAGCAGAAAGCACCATACATAATTTCGGTTTTCGTGACACTGCTTCTGAAAATATTGGTGGTGGACAGTTCGTGTCACCCATTCGAAATAGTACCAATTTCAGCAGAGAATATGGTACACCCAACCAAGGTGTTCAGTATGGGAACCAGTACAGTAGCTCTAGGCCTTCTCCATCCACACCGCTTAACTCGAACACATACTGCAACAGCTGTGGGGGTTCTGGCCACAGCTCAACGAACTGCCCGAGTATCATGAGTGGTCCTGCACTGTCTGTTGGAGGTGGGATGTATTCAAATCAAGCTTCTGGCCCTTCGGGTGGTACCTCCGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGCCCTGGCTTGGCCAATGTCCCTCCAGCTTATGGTAACCGTGGCTTCACGGCTAGGTGA 2586 43.58 MAASMASSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHFQQGMLGTQLNELVKSGKLQKGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCDIIGEPVSATRSSANALSGNPLPSVGGLGASPGSGMIGKGNVSSASFEQPKVNQSHVPHMGSYSNPPETGRFSASIAPPSYSKTDSGSRFNGPSPLTGSYGDQKMAYHNSGSDIPRPPLNSNAYARPQPIYQQPPSMYSNRGPIAKNEAAPRIMPISALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNFNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHQIGEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFIEPDFPEAHSLREWFEREGRSTLSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDSFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSSESRFLLNLMEKLKPENSSSATPKAESTIHNFGFRDTASENIGGGQFVSPIRNSTNFSREYGTPNQGVQYGNQYSSSRPSPSTPLNSNTYCNSCGGSGHSSTNCPSIMSGPALSVGGGMYSNQASGPSGGTSGECFKCHQTGHWARDCPGLANVPPAYGNRGFTAR* 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 835283 839951 + CsaV3_3G001070.1 Csa03g00107 521012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00107 861 CDD RPA1_DBD_A 268 371 - -
Csa03g00107 861 SMART c2hcfinal6 829 845 IPR001878 GO:0003676|GO:0008270
Csa03g00107 861 SMART c2hcfinal6 785 801 IPR001878 GO:0003676|GO:0008270
Csa03g00107 861 CDD RPA1_DBD_C 534 707 IPR013955 -
Csa03g00107 861 Gene3D - 378 515 IPR012340 -
Csa03g00107 861 Gene3D - 516 708 IPR012340 -
Csa03g00107 861 SUPERFAMILY Nucleic acid-binding proteins 265 378 IPR012340 -
Csa03g00107 861 CDD RPA1N 13 109 IPR007199 GO:0003677|GO:0005634|GO:0006260
Csa03g00107 861 Gene3D - 781 849 - -
Csa03g00107 861 ProSiteProfiles Zinc finger CCHC-type profile. 786 801 IPR001878 GO:0003676|GO:0008270
Csa03g00107 861 MobiDBLite consensus disorder prediction 748 780 - -
Csa03g00107 861 ProSiteProfiles Zinc finger CCHC-type profile. 830 844 IPR001878 GO:0003676|GO:0008270
Csa03g00107 861 Pfam Replication protein A OB domain 389 492 IPR031657 -
Csa03g00107 861 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 243 707 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Csa03g00107 861 PANTHER REPLICATION PROTEIN A SUBUNIT 9 743 - -
Csa03g00107 861 CDD RPA1_DBD_B 400 507 - -
Csa03g00107 861 Pfam Replication factor-A C terminal domain 550 701 IPR013955 -
Csa03g00107 861 Pfam OB-fold nucleic acid binding domain 279 364 IPR004365 GO:0003676
Csa03g00107 861 MobiDBLite consensus disorder prediction 150 219 - -
Csa03g00107 861 Pfam Zinc knuckle 829 844 IPR001878 GO:0003676|GO:0008270
Csa03g00107 861 PANTHER REPLICATION FACTOR A 1, RFA1 9 743 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Csa03g00107 861 MobiDBLite consensus disorder prediction 140 228 - -
Csa03g00107 861 SUPERFAMILY Retrovirus zinc finger-like domains 811 850 IPR036875 GO:0003676|GO:0008270
Csa03g00107 861 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Csa03g00107 861 Pfam Replication factor-A protein 1, N-terminal domain 10 110 IPR007199 GO:0003677|GO:0005634|GO:0006260
Csa03g00107 861 SUPERFAMILY Nucleic acid-binding proteins 531 708 IPR012340 -
Csa03g00107 861 Gene3D - 265 374 IPR012340 -
Csa03g00107 861 SUPERFAMILY Nucleic acid-binding proteins 384 511 IPR012340 -
Csa03g00107 861 Gene3D - 8 123 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00027 Csa-Chr2:279931 Csa03g00107 Csa-Chr3:835283 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00107 K07466 - csv:101211358 1732.23