Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00110 ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGAGGTGAGGATGGGGCTGCGCGTGGGAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACGCAGATTAAGGACATGGCGTTGAAATTCTCTGGTGCTTATAGGCAGTGCAAGCCTTGCACAGGCTCCAGTAGCTATAAGAAAGGGCAGAGACCTTACCCAGATTTTGACACAGCTTCAGAAGGGGTTCCATATCCTTACATAGGAGGGGCAAGTGCAAGTTCAACCCCTGCTTGGGACTTCCCTCCTATTAATCGCCACCCACATACAAGATCTGACTCTAGATTTAAAGCGGCTTACAGAGGAGACCAGACCCCTGGAGGCGATTCCACCATATCAGCATGTGATGTGGTGCTTGAGGATGAGGATGAGCCGAAAGAGTGGATGGCACAAGTGGAGCCCGGCGTTCACATTACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGAGAGAATTATGACAGAATAACGGAGCTCTATAATGTCCAGAGATTCAATCAACAAGCTCTTCATACGCCACCAAGAACTGAGGACGGGAGGGATTCTTCTTACTCAAAAGTGGGAAGGGATAGTCCGATGACTTCTGCGAACAAAGATTGGACGCCGAGAAACTATAAACCTTCGGGAAGTAAAGGATTTCCATCTGACCAGCATTATGATCATGGAAACAGCCACCCATATGCAGGTTCAAGCGCCTACCCAGCAGGCAGCGTCAAAGGTGACATGTCCTCCATGGAAGCATCACGCACAACAACCTCTTCTAGAGACGAGCCTTCAATTTCCATTAGCAATGCAAGCGACATTGAAGCGGAATGGGTCGAGGAAGATGAACCGGGGGTCTACATAACTATCAGGCAGCTTGTTGATGGCACTAGAGAACTTCGTCGTGTTAGATTCAGCCGTGAAAGGTTTGGTGAAATGAACGCGAAGCAATGGTGGGAACATAACAGGGAGAGGATCCAAGCTCAATACCTATAA 1086 48.16 MFTCIACTKQTDDGGEDGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPINRHPHTRSDSRFKAAYRGDQTPGGDSTISACDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSKVGRDSPMTSANKDWTPRNYKPSGSKGFPSDQHYDHGNSHPYAGSSAYPAGSVKGDMSSMEASRTTTSSRDEPSISISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEMNAKQWWEHNRERIQAQYL* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 860991 867400 - CsaV3_3G001100.1 Csa03g00110 521015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00110 361 MobiDBLite consensus disorder prediction 279 296 - -
Csa03g00110 361 Pfam Transcription factor BRX N-terminal domain 23 56 IPR027988 -
Csa03g00110 361 MobiDBLite consensus disorder prediction 11 30 - -
Csa03g00110 361 Pfam Transcription factor regulating root and shoot growth via Pin3 305 360 IPR013591 -
Csa03g00110 361 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
Csa03g00110 361 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Csa03g00110 361 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 361 - -
Csa03g00110 361 ProSiteProfiles BRX domain profile. 306 361 IPR013591 -
Csa03g00110 361 MobiDBLite consensus disorder prediction 223 247 - -
Csa03g00110 361 MobiDBLite consensus disorder prediction 203 296 - -
Csa03g00110 361 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 361 IPR044532 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00110 Csa-Chr3:860991 Csa07g02368 Csa-Chr7:21842116 8.00E-111 dispersed
Csa03g00110 Csa-Chr3:860991 Csa06g01879 Csa-Chr6:16952939 3.28E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00110 - - csv:101210860 751.125