Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00112 ATGGGATCTTTTAAGGGCCATGTTCTTCCAGGAACGCTGTTTCTTCTGGTTGGTGTTTGGCACGTGTGGAGTGCTCTGCTTCGGTACGTGTTAAATCCTAGCTTGTTTCGTGTTCGTGTGTGGAATCCTATGCCTGGCTTCGACGGAAAACTCAAATACTTAGAGCTTTATGTTATTGTTATTGGCGGTTTCATTGATTTGTGTATTGAGCTTTTGTATTCAACCCATCTCAAGTTCTTCGTTAATGGAGTTTTGAACCCTTCACATATGAACAACTTTGAACATTCGGGGATGCTTCTCATGTTCTTCATTTTTGGAGTCATCGCTTTGCTCTCTGAAAAATCCAGATTTGTTCGTCTACCAGACGAAGCGCTTTGTCTGATTGCTGCCATGGCATTCTGCGCCGAATATCTGTTGTTTTACTTTCATTCAACTACTCATAAAGGCCTCGAGGGTTACTACCATATTCTCCTTGTCCTCTTGATAGGGCTCTGCATTTTGTCGACGGTTGCTGGAGCTATTTTACCTACCAGCTTTTCAGTTGACGTGTGCAGCGGTATCGCCATAACGCTCCAGGGTCTTTGGTTTTATCAAACAGCCTTCACTTTGTATGGTCCAATGATGCCTGATGGTTGTGAGCTAAAGGATGATATGATGGTCATGTGTTATTCAAAAGATAGTGAGGTTAGAGGTGAACTCCTTGCAAATTTCCAGCTCTTTTCTATGGTCGTTGGAGTCCTTGGTGGGGTCATCGGAGTTTACTGGTTTGCAGCATCGAAGTACGGGCGATCCGACCTCGGAAGTTCGAATGCCATCCAAGACTAG 825 44.24 MGSFKGHVLPGTLFLLVGVWHVWSALLRYVLNPSLFRVRVWNPMPGFDGKLKYLELYVIVIGGFIDLCIELLYSTHLKFFVNGVLNPSHMNNFEHSGMLLMFFIFGVIALLSEKSRFVRLPDEALCLIAAMAFCAEYLLFYFHSTTHKGLEGYYHILLVLLIGLCILSTVAGAILPTSFSVDVCSGIAITLQGLWFYQTAFTLYGPMMPDGCELKDDMMVMCYSKDSEVRGELLANFQLFSMVVGVLGGVIGVYWFAASKYGRSDLGSSNAIQD* 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 889425 893301 - CsaV3_3G001120.1 Csa03g00112 521017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00112 274 Pfam Family of unknown function (DUF716) 123 254 IPR006904 -
Csa03g00112 274 PANTHER PLANT VIRAL-RESPONSE FAMILY PROTEIN 1 269 - -
Csa03g00112 274 PANTHER PLANT VIRAL-RESPONSE FAMILY PROTEIN 1 269 - -
Csa03g00112 274 Coils Coil 269 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00112 - - - csv:101209951 547.354
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00112 Csa-Chr3:889425 Csa07g00812 Csa-Chr7:5703331 2.27E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g798 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00112 Cam10g0108 Cec10g0117 Cco10g0118 Clacu10g0114 Cmu10g0961 Cre10g0371 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00112 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007770 1 0 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00112 Csa_Chr03 FPKM 56.935795 63.041836 80.9757 78.069824 55.829197 56.058132 56.751083 56.689964 52.480633 50.582172