Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00125 ATGGCCGCTTTACAGTACCTCGATACCCTTCGTAACTCGCACCCTGAGCTCGCTGAATGGTACAATACCCTTGCAGATCTGTACCAGAAGAAGCTTTGGCATCAGCTCACACTCAAGCTTGAGCAATTCGTCGCTCTGACCGTCTTCCAGGCTGGTGATGCACTGATTCAGTTGTATCATAACTTCATCACTGATTTTGAGACCAAAATCAATCTTCTCAAGCTTGCTCATTTTGCTGTGATTGTCTCTCGTCAATATGCGGAGAAAGAAGCCGCCATTAGTTATCTTGAAGGGATAATTGAGAAACTAAGGAGTACTAAAGAGCTGCGCATAGAGGAGCCTATCCTCTATATTAAGATGCAAATAGCTATTTTTAAACTTGAGCAAGGTGACCAAAAAGAGTGCAAGAAACTATTGGAAGATGGAAAGAGCACTCTTGACAGCATGACGGACATTGATCCATCTGTTTATGCTAGCTATTATTGGGTTTCATCTCAATTTTACAAGTCCCGCAAAGAATTTGCTGAGTTCTATAAAAGTGCTCTTCTTTATCTAGCATACACTTCAGTGGAATCACTGTCAGACTCATTTAAATTGGATTTGGCATTTGATTTATCTCTTTCTGCACTTCTGGGAGACAACATCTACAACTTTGGAGAGCTTCTAGGGCATCCTATTATCAAAAGTCTGTCGGGCACAAAGGTCGAGTGGCTTTACTACATTCTTCAGGCATTCAATTCTGGTGATTTAGTTCGCTATCAAGAGCTATGCCAAGTCCATAACGCAGCTTTAAGGGCCCAACCAGCTTTAGTTGATAATGAGAAGAAACTATTAGAGAAAATCAACATTCTTTGCCTCATGGAAATTATCTTCAGCCGGCCGTCTGAAGACCGAACCATTCCATTGAAAGTTATAGAAGAGCGGACAAAACTTTCTACAGAGGATGTGGAGCATCTACTAATGAAGAGTCTCTCTGTCCACCTTATAGAAGGTATAATCGATCAAGTCGAGGGAACGGTACATGTTTCCTGGGTGCAACCTAGGGTTCTGGGCATTCAACAGATCAAATCCCTGCGAGACCGGCTGGACAATTGGGTGGAAAAAGTGCACACGGCTTTACTTTCGGTCGAGGCCGAGACCCCTGATCTAGTTGCATCATAA 1161 42.89 MAALQYLDTLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKELRIEEPILYIKMQIAIFKLEQGDQKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKSRKEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLGHPIIKSLSGTKVEWLYYILQAFNSGDLVRYQELCQVHNAALRAQPALVDNEKKLLEKINILCLMEIIFSRPSEDRTIPLKVIEERTKLSTEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDNWVEKVHTALLSVEAETPDLVAS* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 977608 981606 + CsaV3_3G001250.1 Csa03g00125 521030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00125 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B-LIKE 1 385 - -
Csa03g00125 386 Pfam PCI domain 238 343 IPR000717 -
Csa03g00125 386 SUPERFAMILY Winged helix DNA-binding domain 274 348 IPR036390 -
Csa03g00125 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Csa03g00125 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 - -
Csa03g00125 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 385 IPR035298 -
Csa03g00125 386 SMART PINT_4 272 365 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00125 K03039 PSMD13, RPN9; 26S proteasome regulatory subunit N9 - csv:101208086 736.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00125 Csa-Chr3:977608 Csa05g03037 Csa-Chr5:30541087 9.89E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g756 Blo02g00972 . Bda06g01241 Bda08g00645 Bpe05g00514 . . . Cmo06g00624 . . . . . . . . . . . . . . . Cla10g00121 Cam10g0119 Cec10g0128 Cco10g0128 Clacu10g0125 Cmu10g0972 Cre10g0382 . . . . Lsi07g01154 . . Cme06g02433 . . . . . . Bma05g00700 . . . . Cma06g00617 . Car06g00550 . . . . . . . . . . . . . . . . . . Csa03g00125 Chy06g02180 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006085 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00125 Csa_Chr03 FPKM 13.763951 11.662406 9.951734 10.645305 79.844414 79.97081 79.532951 11.030339 11.048995 10.051166