Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00126 ATGTCGGTTGAATCAGAAAGAAGGGAGGAAGAGAACTGGAGGGAGTTGGTGAAGAAGATGCTCCCACCTGGAGCATCTCTCCCTGAAAGTGCTAGCGATCTGGATTACTCTATAGCTATGGAATACGAGGGTCCACCAGTAGTCTATGATGTTCCAAGAGTTGAACCCCTTGATGTACATCCTCATTCAATTCCAGTTGCTGAACCTTTATCTGAATCCCAAAGGTCAATTGCAAATAACGGCCCCCCAACAATCGAACCAATTCCTTTGCCAGTCTCTCGAATCGTTGGAGTCACAAGTCCACCTACTCAGAGTCCAAGAGTATCAGGAAGTTCAGAATCTGTAGTATCTGTCTTGCAAAACCATGATTTTTCTTCAGCTTCACCTTCTGCCTCCCCAGCTTCAGTTCACAACCCTACTAATAATCAGCCTAAACAAGTAGTTATTGATGCGAGGAGAGCACCTGTTGTCACTTTCAATACTGACAACTCCAATCGTAAAGAACTTAGCGTCGAGAAGCAAGTGTATCCAGAATATGTAGGAGTTTCAAAAGAGAAAAAGAAAAAGAAAAGTAGGGTCTGTTATAGGTGTGGGAAAGGAAAGTGGGAAACAAAGGAGTCATGTCTAGTTTGTGATGCCAAGTATTGCAGCAATTGTGTGCTTAGGGCTATGGGATCAATGCCTGAAGGGCGTAAATGTGTCACTTGCATCGGTGATCCCATAGACGAATCTAAGAGGTCAAAATTGGGCAAGCATTCGAGGGTCTTGTCTCGACTACTTAGTCCTTTGGAAGTGAAGCAAATTATGAAAGCTGAGAAAGAATGTCCTGCTAATCAACTTCGCCCAGAGCAGCTGATTGTAAATGGATTACCCCTAAGGTCCGAAGAGATGGCAGAATTACTTGGATGCCCTCTTCCTCCACAGAAATTGAAACCTGGGAGATATTGGTACGACAAAGAGTCTGGTCTCTGGGGAAAGGAAGGAGAAAAGCCAGATAGAATCATTAGTTCAAACTTAAGTTTCACTGGAAAACTTAGCCCCCATGCAAGCAATGGAAACACTGAAGTTTACATCAATGGTCGAGAAATCACTAGACTCGAATTAAGGGTGCTTAAGTTGGCAAACGTACAATGCCCACGTGACACACATTTTTGGGTCTACGACGACGGTCGCTATGAGGAAGAAGGTCAAAACAATATCAGAGGAAATATTTGGGAGAAGGCTTCAACACGCTTTGTTTGTGCTTTGTTCTCATTGCCCGTGCTACATGGTCAACCACCTCATGGAGTGAGAGAAGAGGCTAGCAATTATACAACAGTCCCCAATTTCTTTGAGCAACAAAAGAGGATTCAGAAACTTCTTCTCATTGGGATTGAAGGCTCTGGAACTAGCACTATCTTTAAGCAGGGAAAATTTTTGTATGGGAACAGATTTAATGAAGAAGAACTGCAAGACATCAAACTAATGATTCAGAGTAATATGTACAAATATCTTAGCATCTTACTAGATGGTCGAGAACGCTTTGAGGAGGAGATCATAAACCGGAAAAAGGCTTCAATTTCACAGGGGGATCAAGCTCTTGAAACTGATGGAGAGAAGGAAGCTAGTGAAAGCATATATTCCATCAATCCGAAGTTGAAACATTTTTCCGATTGGCTCCTCGATATCATTGCCACTGGAGATTTGGATGCATTTTTCCCTGCTGCAACTCGTGAGTATGCTCCATTAGTTGAAGAGTTATGGAAGGACCCTGCAATCCAGGAAACTTACAAGAGAAAAAGTGAGCTACACTTTCTTCCCGATGTTGCGGAGTACTTCTTAAGCAGGGCAGTGGAGGTTTCAAGTAACGAATACGAACCTTCGGATAGAGATATCCTGTATGCAGAAGGGGTAACCCAAGGGAATGGATTGGCTTTCATGGAATTTTCACTTGATGATCGGAGTCCAATGTCCGAGACCTATACCGACAATCTCGAAGCTCCACCCCCACCTCTCACTAGATATCAGCTTATAAGAGTAAGTGCCAAGGGGATGAATGAAGGGTGCAAGTGGGTTGAGATGTTTGAAGATGTTCGAGTCGTCGTCTTTTGTGTTGCTCTTAGTGATTTTGATCAGATGTCTCTTGCCCCAGAAGGTAGTGGCAGCGGAAACCTATTACAAAACAAGATGATGCAGAGCAAGGAGCTTTTTGAGACGATGGTCCGACACCCTTGCTTCAAAGATACCCCATTTGTATTGATACTCAACAAGTACGATCTCTTTGAGGAGAAAGTAAATCGGGGCTCATTGAATGTTTGTGAATGGTTTAACGATTTCAGCCCCGTGCGACCATTGCATAGCAACCAGTCACTATCTCATCAAGCTTACTACTATGTAGCTATGAAATTCAAAGATCTTTATCAATCCATTACGGGTCGTAAGCTATTCGTGTGGCAAGCTAGAGCAAGGGACCGAGTGACTATTGACGAGGCATTCAAGTATATAAGAGAAGTTGTCAAGTGGGATGAGGAGAAAGAGGAGAACTACTATGGAGGACCCGAAGATTCCTTTTACAGCACAGATGTGAGCTCATCTCCATTTGTTAGACAACAATGA 2595 43.28 MSVESERREEENWRELVKKMLPPGASLPESASDLDYSIAMEYEGPPVVYDVPRVEPLDVHPHSIPVAEPLSESQRSIANNGPPTIEPIPLPVSRIVGVTSPPTQSPRVSGSSESVVSVLQNHDFSSASPSASPASVHNPTNNQPKQVVIDARRAPVVTFNTDNSNRKELSVEKQVYPEYVGVSKEKKKKKSRVCYRCGKGKWETKESCLVCDAKYCSNCVLRAMGSMPEGRKCVTCIGDPIDESKRSKLGKHSRVLSRLLSPLEVKQIMKAEKECPANQLRPEQLIVNGLPLRSEEMAELLGCPLPPQKLKPGRYWYDKESGLWGKEGEKPDRIISSNLSFTGKLSPHASNGNTEVYINGREITRLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPVLHGQPPHGVREEASNYTTVPNFFEQQKRIQKLLLIGIEGSGTSTIFKQGKFLYGNRFNEEELQDIKLMIQSNMYKYLSILLDGRERFEEEIINRKKASISQGDQALETDGEKEASESIYSINPKLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYKRKSELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFMEFSLDDRSPMSETYTDNLEAPPPPLTRYQLIRVSAKGMNEGCKWVEMFEDVRVVVFCVALSDFDQMSLAPEGSGSGNLLQNKMMQSKELFETMVRHPCFKDTPFVLILNKYDLFEEKVNRGSLNVCEWFNDFSPVRPLHSNQSLSHQAYYYVAMKFKDLYQSITGRKLFVWQARARDRVTIDEAFKYIREVVKWDEEKEENYYGGPEDSFYSTDVSSSPFVRQQ* 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 980855 988413 - CsaV3_3G001260.1 Csa03g00126 521031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00126 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 447 837 IPR027417 -
Csa03g00126 864 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 26 860 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa03g00126 864 MobiDBLite consensus disorder prediction 124 145 - -
Csa03g00126 864 MobiDBLite consensus disorder prediction 69 88 - -
Csa03g00126 864 ProSiteProfiles G-alpha domain profile. 449 843 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa03g00126 864 MobiDBLite consensus disorder prediction 96 115 - -
Csa03g00126 864 SUPERFAMILY FYVE/PHD zinc finger 176 236 IPR011011 -
Csa03g00126 864 Gene3D - 646 841 IPR027417 -
Csa03g00126 864 MobiDBLite consensus disorder prediction 840 864 - -
Csa03g00126 864 SMART galpha_1 445 842 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa03g00126 864 MobiDBLite consensus disorder prediction 97 115 - -
Csa03g00126 864 SUPERFAMILY Transducin (alpha subunit), insertion domain 478 628 IPR011025 GO:0007165
Csa03g00126 864 Pfam G-protein alpha subunit 447 832 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa03g00126 864 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 26 860 - -
Csa03g00126 864 MobiDBLite consensus disorder prediction 850 864 - -
Csa03g00126 864 Gene3D - 479 629 IPR011025 GO:0007165
Csa03g00126 864 CDD G-alpha 451 835 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa03g00126 864 PRINTS Alpha G protein (transducin) signature 452 467 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa03g00126 864 PRINTS Alpha G protein (transducin) signature 618 640 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa03g00126 864 PRINTS Alpha G protein (transducin) signature 691 719 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Csa03g00126 864 PRINTS Alpha G protein (transducin) signature 744 753 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00126 - - - csv:101207353 1709.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00477 Csa-Chr1:3025634 Csa03g00126 Csa-Chr3:980855 7.98E-08 dispersed
Csa01g00492 Csa-Chr1:3237671 Csa03g00126 Csa-Chr3:980855 0 dispersed
Csa01g01868 Csa-Chr1:15674214 Csa03g00126 Csa-Chr3:980855 3.20E-09 dispersed
Csa02g01217 Csa-Chr2:11964209 Csa03g00126 Csa-Chr3:980855 0 dispersed
Csa03g00126 Csa-Chr3:980855 Csa04g02585 Csa-Chr4:25381042 1.99E-60 dispersed
Csa03g00126 Csa-Chr3:980855 Csa06g02894 Csa-Chr6:25157032 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00126 Csa_Chr03 FPKM 73.997368 72.381462 24.728731 28.024225 14.690876 20.643909 17.943769 29.798826 32.338219 31.228935