Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00128 ATGCAGAAATTGGGAGATTTCAAGCTACCGCATTTCTTCAATTATCCTCCATATTTCACTTTGCAACCAGTGAGGGACACCCGTGAGAAGCAAATTCAACTTTGGAAGGAACTTATCCTTGATTACTGCCGAACGCAAAAGATATTTGTCATTGGACTTGAAGAGGACTTTCCTCTATTTTCAAATTCTGTGATTGAAAGATCTCTCAGTCATGAAGCTAGACAAGCTTTTATCTCAGCTTTAGTTTCAGATGGTCGTGCAGAATGGCTGGATAAAGGACATAGGAAATGCCTTATTTTATGGCACCGGATTCAAGATTGGGCTGACATCATTTTGCACTTTGTGAAAAATAATGGACTTGAAGATAGTGTTATGACAGTCGAGGAAATACGTTCAGGAGTTGAATCTAGAGGAACAGAGCTTGAAGGGATTGATCGTACGATATTAATGAGAGCATTGAAGCTACTTGAACAAAAGGGGAAGCTTGCAATTTTCAAAGGTTCTTCGACAGATGATGAAGGCATTAAATTCTCTGTATAA 540 38.89 MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLFSNSVIERSLSHEARQAFISALVSDGRAEWLDKGHRKCLILWHRIQDWADIILHFVKNNGLEDSVMTVEEIRSGVESRGTELEGIDRTILMRALKLLEQKGKLAIFKGSSTDDEGIKFSV* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 993217 995377 + CsaV3_3G001280.1 Csa03g00128 521033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00128 179 Gene3D - 103 178 IPR036388 -
Csa03g00128 179 Pfam ESCRT-II complex subunit 13 145 IPR008570 GO:0000814|GO:0071985
Csa03g00128 179 Gene3D - 5 101 IPR014041 -
Csa03g00128 179 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 1 179 IPR008570 GO:0000814|GO:0071985
Csa03g00128 179 PANTHER - 1 179 - -
Csa03g00128 179 SUPERFAMILY Winged helix DNA-binding domain 7 107 IPR036390 -
Csa03g00128 179 SUPERFAMILY Winged helix DNA-binding domain 102 177 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00128 K12189 VPS25, EAP20; ESCRT-II complex subunit VPS25 - csv:101207111 363.614
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g748 Blo02g00975 . . Bda08g00644 Bpe05g00515 . . . Cmo06g00628 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g02436 . . . . . . Bma05g00701 . . . . Cma06g00620 . Car06g00554 . . . . . . . . . . . . . . . . . . Csa03g00128 Chy06g02178 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008628 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 2 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00128 Csa_Chr03 FPKM 8.775959 9.117551 4.097942 3.944923 16.334843 13.126515 15.347908 2.058112 2.342669 2.3072