Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00129 ATGAATGGAGTAACCGAGGAGAAATCGGAGGCTCGGCGTCTCAGAGAACTGGCAGAGAAGAGGTTTGGAGATTCTAATCTCAAGTCTGCTCTCAAGTACGCCAAGCGAGCTCATCGCCTCGATCCAAACCTTGACGGCGCCGCCGAAATTCTCACTTCCTTTCAGATTCTCCGAGTCGCCGCTGAGTCTCCGGACGACTGGTACCGGATTCTTCAGGTGGAGCCATTCGCTCACATCAACACAATAAAAAAACAGTACAAGAAGCTCGCTCTACTTTTGCATCCGGATAAGAATCCCTATTCCGGCTCCGAGGAGGCGTTTAAGATCGTCGGCGAGGCGTTTCACTTTTTATCCGATAAGGTTAGGAGGAAGGAGTATGATTTGAAGCTTCGGATTCGGATTCAGGACGAGAAGATTGGAGATGCGGCTGTGGAGAGCGAGACGTTTTGGACTGCTTGCTCAACGTGCCGGCTTCTGCATCAATTCGAGAAGAGGTATGTAGAGCATACTCTAGTCTGCCCTAGCTGTAGAAAAAGTTTTAAAGCTGTTGAAGTTGTGTGTAACGAACCTGAGATTAGGGAAATTGGGGTCATGGTTGGGGGTAGAAGGTTGAGGAATTTGAGTTCTAGGCAAAATTTTGGCAGTTTCAAAGGATTAAACGTATCTTTAAATACTGTTCAATGGAAGAGAAATGCTGCAGTGAGTAAGATGTATGGTGAGAAGAAGAAAGGTCTGGAGTCAAATGGAAAGGCTAGTTCCGTAGAAGGTGAAGTTAGAAATGGCGATTTGGAGGAGGGATTTGATGATGATGATGGGATTTGTAGAAGAAGATTAAGAAGTGGGATTATGAGGAAGAAGATGAGTAGTGTTGGTGAGGTTTTGGAGAGGTCTAAGCTAAAGCCTGTAAAAATGGAGGAGGAAATGACTTTGGCTGAGTTGCAGTCTCAAGTGATTCAGAAATCTCGAAAAGAGAAGATGAAACTGAAGTTAAAAGAGGAGGAGGAAGCAGAAGGAGTGAACAAGAGAAAGAAACTGGTTGAGGAGAATGACAATGACGATGAGAGATTAACTTTAAAAGAGATCGAAGGTCTACTACGGATTCGTCGGCAAGAAACATCAAAGAGTGCTGGGTTTTTGGAGAATGCAAAACAAAGGAGTTCCAAGAAGAATGTGAATCTTGAAGCTCAGAAGAAGCAACAAGGACCTTCATGTAATGGTGTTGATTTGGATATGATGGTTGTGGAAGATTCAGATTTTTATGATTTTGACAAGGACAGAATGGAGAGAAGTTTCAAAAAAGGGCAAGTGTGGGCTGTATATGATGATGATGATGGAATGCCAAGGCATTATGGCTTAATTGAAAAAGTTACTGTAAATCCTTTTGAAGTGAAAATGAGTTGGTTGGATGTTCAAAACAATGGAGATGAAAGACTACTTTGTTGGGAGAAGATGGGATTTCATGTATCTTGTGGTAGATTTAAGGTCACTAAAAAAACAACCATTCATTCATTGAACATTTTTTCTCATGTTGTGGATTGTGAAAGAGCAGCAAAGGAAGTCCATAGGATTTATCCTAAAAAGGGATCAGTATGGGCACTTTACAAAGAAGAAGAAGAAGGTTTGGATGCTGAGAAGAGAAGAAACCTTTCAAATAAAGAGAAACGGACTTACGATATCGCGGTGTTTTTAACAACTTACAGTGAGATGCATGGTTTAAGTATGGCTTATCTTGAGAAGGTTAATGGTTACAAGACCATATTCAAGAGAAGGGAGATTGGTTATCATGCTATTAGATGGTTCGAAAAGGACAATATCCGATTATTTTCGCATCAAATTCCTGCTCGGAAGCTTTCTATAGATGATGCTCTTGGGAAACTGAAGGACTGTTGGGAACTTGATCCAGCTTCTCTTCCCTCGGATTTGCTAACCACCTGCTGA 1938 42.0 MNGVTEEKSEARRLRELAEKRFGDSNLKSALKYAKRAHRLDPNLDGAAEILTSFQILRVAAESPDDWYRILQVEPFAHINTIKKQYKKLALLLHPDKNPYSGSEEAFKIVGEAFHFLSDKVRRKEYDLKLRIRIQDEKIGDAAVESETFWTACSTCRLLHQFEKRYVEHTLVCPSCRKSFKAVEVVCNEPEIREIGVMVGGRRLRNLSSRQNFGSFKGLNVSLNTVQWKRNAAVSKMYGEKKKGLESNGKASSVEGEVRNGDLEEGFDDDDGICRRRLRSGIMRKKMSSVGEVLERSKLKPVKMEEEMTLAELQSQVIQKSRKEKMKLKLKEEEEAEGVNKRKKLVEENDNDDERLTLKEIEGLLRIRRQETSKSAGFLENAKQRSSKKNVNLEAQKKQQGPSCNGVDLDMMVVEDSDFYDFDKDRMERSFKKGQVWAVYDDDDGMPRHYGLIEKVTVNPFEVKMSWLDVQNNGDERLLCWEKMGFHVSCGRFKVTKKTTIHSLNIFSHVVDCERAAKEVHRIYPKKGSVWALYKEEEEGLDAEKRRNLSNKEKRTYDIAVFLTTYSEMHGLSMAYLEKVNGYKTIFKRREIGYHAIRWFEKDNIRLFSHQIPARKLSIDDALGKLKDCWELDPASLPSDLLTTC* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 995851 1000002 - CsaV3_3G001290.1 Csa03g00129 521034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00129 645 Coils Coil 379 399 - -
Csa03g00129 645 Coils Coil 1 21 - -
Csa03g00129 645 MobiDBLite consensus disorder prediction 381 407 - -
Csa03g00129 645 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Csa03g00129 645 SUPERFAMILY Chaperone J-domain 57 131 IPR036869 -
Csa03g00129 645 Pfam Domain of unknown function (DUF3444) 411 618 IPR024593 -
Csa03g00129 645 SMART dnaj_3 65 122 IPR001623 -
Csa03g00129 645 Pfam DnaJ domain 66 127 IPR001623 -
Csa03g00129 645 PANTHER BNAC03G44070D PROTEIN 7 644 - -
Csa03g00129 645 CDD DnaJ 66 119 IPR001623 -
Csa03g00129 645 Coils Coil 329 349 - -
Csa03g00129 645 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 7 644 - -
Csa03g00129 645 PRINTS DnaJ domain signature 68 86 IPR001623 -
Csa03g00129 645 PRINTS DnaJ domain signature 86 101 IPR001623 -
Csa03g00129 645 PRINTS DnaJ domain signature 102 122 IPR001623 -
Csa03g00129 645 Gene3D DnaJ domain 55 151 IPR036869 -
Csa03g00129 645 MobiDBLite consensus disorder prediction 381 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00129 - - - csv:101207675 1254.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00129 Csa-Chr3:995851 Csa04g00276 Csa-Chr4:1706265 3.53E-74 dispersed
Csa03g00129 Csa-Chr3:995851 Csa03g04491 Csa-Chr3:39120447 2.66E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g740 . . . . . . . . Cmo06g00629 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01157 . . Cme06g02437 . . . . . . . . . . . Cma06g00621 . Car06g00555 . . . . . . . . . . . . . . . . . . Csa03g00129 Chy06g02177 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013922 1 1 1 0 0 1 1 1 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00129 Csa_Chr03 FPKM 7.540471 8.36941 12.654501 12.769839 8.761894 10.423731 10.154469 20.674498 19.664463 21.139513