Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00131 | ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAGGGAGACGAAGACACCGCCTCCTACTACTACACAGGAGCAGACTACAACCACTAGTGCTGGCACGGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCACCTATTCCTCCGCATGGTTTCTTGGCGTCAAGCCCCCAGGCTCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATATGCTCACCCTTCCATGCCCCCGGGATCATATCCTTTTAGCCCATTTGCAATGCCTTCTCCGAATGGCGTCACTGAGGCCTCTGGTAATACAGCAGGAAGTTTGGAGGGAGACGTTAAGCCACCTGAAGTAAAGGAAAAGTTGCCAATTAAAAGATCGAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAACAATGAGCTGGGTAAAACATCTGGAACATCTGCCAACGGAGCATACTCTAAGAGTGCTGAGAGTGGCAGTGAAGGTACAAGTGAAGGAAGTGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCAAGACAGTTTGGAAGTTGAAGTATCTCAGAACGGTAACTCAGTGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCTATGGCTGTCATCCCATTGGCAACTGCTGGGGCCCCAGGAGTTGTTCCCGGTCCAACAACCAACTTAAATATTGGAATGGACTATTGGGGCGCATCATCCGCTATCCCTGCAATGCGTGGGAAGGTTCAATCAACTCCAGTTGCTGGAGGACTAGTTACCACTGGATCTCGGGATAGCATACAGTCACAGCTTTGGCTGCAGGATGAGAGAGAGCTTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGATGAATTAGCCCACCGAGCAGAAGCCTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTTAACCGGATAAGGAGTGAATATGAACAGCTACTTTCGGAGAACGCTTCTCTGAAGGAAAGACTCGGAGAAGTTTCGGGAAACGAAGAACTAAGGACCAGCAGGAATGGCCAGCGTACAAATAATGAAACCACCACAAAAACTACAGAGTCAGAGGTCGTGCAAGTTGGTAACAAGAATTGA | 1218 | 47.37 | MSGSEMEKPPKDRETKTPPPTTTQEQTTTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGVTEASGNTAGSLEGDVKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKSAESGSEGTSEGSDANSQNESQPKLGSRQDSLEVEVSQNGNSVHGTQNGGSNTQAMAVIPLATAGAPGVVPGPTTNLNIGMDYWGASSAIPAMRGKVQSTPVAGGLVTTGSRDSIQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYEQLLSENASLKERLGEVSGNEELRTSRNGQRTNNETTTKTTESEVVQVGNKN* | 406 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1007649 | 1016234 | + | CsaV3_3G001310.1 | Csa03g00131 | 521036 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00131 | 405 | MobiDBLite | consensus disorder prediction | 374 | 405 | - | - | |
Csa03g00131 | 405 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 300 | 363 | IPR004827 | GO:0003700|GO:0006355 | |
Csa03g00131 | 405 | MobiDBLite | consensus disorder prediction | 17 | 41 | - | - | |
Csa03g00131 | 405 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Csa03g00131 | 405 | Pfam | Disordered region downstream of MFMR | 136 | 262 | - | - | |
Csa03g00131 | 405 | MobiDBLite | consensus disorder prediction | 300 | 322 | - | - | |
Csa03g00131 | 405 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 1 | 395 | IPR044827 | GO:0003700|GO:0006355|GO:0043565 | |
Csa03g00131 | 405 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Csa03g00131 | 405 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 305 | 320 | IPR004827 | GO:0003700|GO:0006355 | |
Csa03g00131 | 405 | MobiDBLite | consensus disorder prediction | 113 | 226 | - | - | |
Csa03g00131 | 405 | CDD | bZIP_plant_GBF1 | 303 | 353 | IPR045314 | GO:0003700|GO:0006355 | |
Csa03g00131 | 405 | Gene3D | - | 301 | 355 | - | - | |
Csa03g00131 | 405 | SMART | brlzneu | 298 | 362 | IPR004827 | GO:0003700|GO:0006355 | |
Csa03g00131 | 405 | SUPERFAMILY | Leucine zipper domain | 301 | 357 | IPR046347 | GO:0003700|GO:0006355 | |
Csa03g00131 | 405 | Pfam | bZIP transcription factor | 298 | 360 | IPR004827 | GO:0003700|GO:0006355 | |
Csa03g00131 | 405 | Coils | Coil | 318 | 373 | - | - | |
Csa03g00131 | 405 | PANTHER | BZIP TRANSCRIPTION FACTOR 68 | 1 | 395 | - | - | |
Csa03g00131 | 405 | MobiDBLite | consensus disorder prediction | 364 | 405 | - | - | |
Csa03g00131 | 405 | MobiDBLite | consensus disorder prediction | 147 | 226 | - | - | |
Csa03g00131 | 405 | Pfam | G-box binding protein MFMR | 3 | 97 | IPR012900 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00131 | Csa-Chr3:1007649 | Csa05g02545 | Csa-Chr5:26886863 | 1.46E-11 | dispersed | |
Csa03g00836 | Csa-Chr3:7108899 | Csa03g00131 | Csa-Chr3:1007649 | 1.56E-47 | transposed | |
Csa03g03403 | Csa-Chr3:30711069 | Csa03g00131 | Csa-Chr3:1007649 | 8.48E-09 | transposed | |
Csa06g03222 | Csa-Chr6:27264439 | Csa03g00131 | Csa-Chr3:1007649 | 6.10E-71 | transposed | |
Csa03g00131 | Csa-Chr3:1007649 | Csa03g04575 | Csa-Chr3:39806582 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31074 | PF16596 | MFMR_assoc | 6.90E-51 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00131 | K09060 | - | csv:101206627 | 752.666 |