Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00131 ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAGGGAGACGAAGACACCGCCTCCTACTACTACACAGGAGCAGACTACAACCACTAGTGCTGGCACGGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCACCTATTCCTCCGCATGGTTTCTTGGCGTCAAGCCCCCAGGCTCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATATGCTCACCCTTCCATGCCCCCGGGATCATATCCTTTTAGCCCATTTGCAATGCCTTCTCCGAATGGCGTCACTGAGGCCTCTGGTAATACAGCAGGAAGTTTGGAGGGAGACGTTAAGCCACCTGAAGTAAAGGAAAAGTTGCCAATTAAAAGATCGAAAGGAAGTTTGGGCAGTTTGAACATGATTACAGGGAAGAACAATGAGCTGGGTAAAACATCTGGAACATCTGCCAACGGAGCATACTCTAAGAGTGCTGAGAGTGGCAGTGAAGGTACAAGTGAAGGAAGTGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCAAGACAGTTTGGAAGTTGAAGTATCTCAGAACGGTAACTCAGTGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCTATGGCTGTCATCCCATTGGCAACTGCTGGGGCCCCAGGAGTTGTTCCCGGTCCAACAACCAACTTAAATATTGGAATGGACTATTGGGGCGCATCATCCGCTATCCCTGCAATGCGTGGGAAGGTTCAATCAACTCCAGTTGCTGGAGGACTAGTTACCACTGGATCTCGGGATAGCATACAGTCACAGCTTTGGCTGCAGGATGAGAGAGAGCTTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGACGATCCCGGTTACGCAAGCAGGCAGAATGTGATGAATTAGCCCACCGAGCAGAAGCCTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTTAACCGGATAAGGAGTGAATATGAACAGCTACTTTCGGAGAACGCTTCTCTGAAGGAAAGACTCGGAGAAGTTTCGGGAAACGAAGAACTAAGGACCAGCAGGAATGGCCAGCGTACAAATAATGAAACCACCACAAAAACTACAGAGTCAGAGGTCGTGCAAGTTGGTAACAAGAATTGA 1218 47.37 MSGSEMEKPPKDRETKTPPPTTTQEQTTTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSMPPGSYPFSPFAMPSPNGVTEASGNTAGSLEGDVKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKSAESGSEGTSEGSDANSQNESQPKLGSRQDSLEVEVSQNGNSVHGTQNGGSNTQAMAVIPLATAGAPGVVPGPTTNLNIGMDYWGASSAIPAMRGKVQSTPVAGGLVTTGSRDSIQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYEQLLSENASLKERLGEVSGNEELRTSRNGQRTNNETTTKTTESEVVQVGNKN* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1007649 1016234 + CsaV3_3G001310.1 Csa03g00131 521036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00131 405 MobiDBLite consensus disorder prediction 374 405 - -
Csa03g00131 405 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 300 363 IPR004827 GO:0003700|GO:0006355
Csa03g00131 405 MobiDBLite consensus disorder prediction 17 41 - -
Csa03g00131 405 MobiDBLite consensus disorder prediction 1 15 - -
Csa03g00131 405 Pfam Disordered region downstream of MFMR 136 262 - -
Csa03g00131 405 MobiDBLite consensus disorder prediction 300 322 - -
Csa03g00131 405 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 395 IPR044827 GO:0003700|GO:0006355|GO:0043565
Csa03g00131 405 MobiDBLite consensus disorder prediction 1 43 - -
Csa03g00131 405 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 305 320 IPR004827 GO:0003700|GO:0006355
Csa03g00131 405 MobiDBLite consensus disorder prediction 113 226 - -
Csa03g00131 405 CDD bZIP_plant_GBF1 303 353 IPR045314 GO:0003700|GO:0006355
Csa03g00131 405 Gene3D - 301 355 - -
Csa03g00131 405 SMART brlzneu 298 362 IPR004827 GO:0003700|GO:0006355
Csa03g00131 405 SUPERFAMILY Leucine zipper domain 301 357 IPR046347 GO:0003700|GO:0006355
Csa03g00131 405 Pfam bZIP transcription factor 298 360 IPR004827 GO:0003700|GO:0006355
Csa03g00131 405 Coils Coil 318 373 - -
Csa03g00131 405 PANTHER BZIP TRANSCRIPTION FACTOR 68 1 395 - -
Csa03g00131 405 MobiDBLite consensus disorder prediction 364 405 - -
Csa03g00131 405 MobiDBLite consensus disorder prediction 147 226 - -
Csa03g00131 405 Pfam G-box binding protein MFMR 3 97 IPR012900 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00131 Csa-Chr3:1007649 Csa05g02545 Csa-Chr5:26886863 1.46E-11 dispersed
Csa03g00836 Csa-Chr3:7108899 Csa03g00131 Csa-Chr3:1007649 1.56E-47 transposed
Csa03g03403 Csa-Chr3:30711069 Csa03g00131 Csa-Chr3:1007649 8.48E-09 transposed
Csa06g03222 Csa-Chr6:27264439 Csa03g00131 Csa-Chr3:1007649 6.10E-71 transposed
Csa03g00131 Csa-Chr3:1007649 Csa03g04575 Csa-Chr3:39806582 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31074 PF16596 MFMR_assoc 6.90E-51 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00131 K09060 - csv:101206627 752.666