Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00140 ATGGTGGAGGGAAGAATATGTTCATCGAGAGAGGATAGAAATGGGTTAGCTCTTCTGAAGCTTAAGAGGCTTCAGCCAACAAATTCTGAAACTGCCAACAAAACTTCAACTGTCAAGAATATGATGAACAGAAGTGGAGGTGATGCTTTAAGGGCCTCAACTCCTTGTGGTGTGAGATTACTTGGTGGCAATGCAGAAACCTTTTCTCGTTCAAGTGGCATGTCACATGAGAGGGATGTCTTTTCAAAAAGGAGAGTAGACAAGTTTGAATATGATGATTTAGAGTGGACGAAGAAGATTCCAGAATGCCCCGTGTATTCTCCCTCAAAGGAGGAATTTGAGGATCCTTTGGTCTATTTGCAAAAGATAGCTCCTGAAGCCTCAAAATATGGCATATGCAAGATTGTTTCCCCACTGATTGCTTCTGTTACTGCTGGGGCTGTATTAATGAAGGAGAAACCAGGGTTCAAGTTTACAACGAGAGTGCAACCTTTTCGTTTTGCTGAATGGGATACTGATGATCAGGTTACCTTTTACATGAGTGGAAGGAACTATACATTTCGCGATTTTGAAAAAATTGCAAACAAGATATATGCTCGTAGATATAGTAGTTCTGGATGTCTACCTGCGTCATATATGGAAAAGGAATTTTGGCGTGAAATTGCTTGTGGGAAGACAGAAAGTGTTGAATATGCTTGCGATGTTGATGGTAGTGCGTTTTCGTCTTCTCCATCTGATGAGCTTGGAACAAGTAAATGGAATTTGAAGAACCTTTCACGGCTACCCAAGTCCATATTGCGCCTTTTGGAAAATCCAATACCGGGAGTAACGGACCCCATGCTTTATATTGGAATGCTGTTTAGTATGTTTGCTTGGCATGTGGAGGATCATTATCTATACAGTATTAATTATCATCATTGTGGGGCATCTAAAACTTGGTATGGCATTCCTGGTCAAGCAGCTTTGCAGTTTGAAAATGTGGTCAGGGAGCATGTGTACACCCGTGATATCTTATCAACTGGTGGAGAGGATGGAGCATTTGACGTTCTTCTGGGGAAAACGACGTTGTTTCCACCAAGTATTTTGTTGGATCATAAGGTGCCTGTATACAGAGCTGTCCAGCAACCTGGAGAGTTTGTAATTACCTTCCCCAGAGCATATCATGCTGGATTCAGCCATGGCTTCAATTGTGGTGAAGCAGTGAACTTTGCGATGGGTGATTGGTTCCCCTTGGGAGCTGTTGCTAGTCAGCGTTATGCACTTCTAAACAGGATGCCTCTAATTCCTCATGAAGAGCTTCTGTGTAAAGAAGCAATGCTTCTCTACACAAATTCAGAATTTGAAGACCCACATTATGCTTCTGCAGAGTTAGCCTCTCATTATTCTATTAAGACTTCTTTTGTAAGTCTGATTCGCTTCCAGCATCGCGCCCGATGGTCATTGATGAAATCAAGAACATGCACTGGTGTATCATCAAATCTTCATGGAACCATCCTATGCAGCTTATGCAAACGTGACTGCTATATATCTTATATCAACTGCAGTTGTTATGGACATCCAGTGTGTCTTCGTCATGATATCAAATCTCTGAACTTCTCATGTGGTAGCAACCGCACACTCATCCTGTGTGAGGATATTTTTGAAATGGAATCCGCAGCTCAGAAATTCGAGCAGGAATGTGGAGGCCAAACTAATTACGTTGAAGAATTGTATTCTTATCCTCTGTTAAATTTATTTAAGGGAGCTGATTCGGATGGATACACTCCTTATTGCGAAATAGAAGTGCAGTTAGATTCCGAATTTACTGCTGCTGCTGCTGCGATTTGTCGCTTGGGAGAAAATGAATGTGTTTCCAGTAGCCAGCCTACACAAAGTTGTATCACTGAAAACCATAGACCTGAACCATCAGATCTTTCTCTCTCTTGTGAAGCGTCAACTCTTTGTTCGGTTGTAGACTATAATGAAACATTGTCCACTACTAGCCATGTACCAAGAAATTCAAGTTTTGAGCACTCTTCTGATATTTCTAACCGTGTACTTGAGCCATCACGTAATAATTGCTCGAGTTCATCTCTAGGCAGTGTACGTGCATCGGAGCTAACCACTTTAGTAGATCGAGAAAGTGATGATTCTGATGCAGAAATTTTTAGGGTCAAGCGTCGCCCGCTGAAGCTGGATAAAAAGACCGGGAGTGATGCCACGTCTTTAAAGCAGTTTGCTGGCCAGGATGGCCGCAAAAGATTGAAGAGAATCCAAACAAATGGGAACTCTGAGCACCTAAAGCCATTGGATTGCCATGGAACCGACAAATCACGTTATAAATTCTACCCTTCTACTGCTCATAAAGACTCTGCAGAAAGTGATGCAATTGAAAAGTGTGGCAGAGGAAGTATCAAGTGCCAGAGATTCAGCAACGAGAAACTAATGAATAGACAGCGCGCCTACGAACTCAACAACCGCAGAAGGGAACGGTTTCAGCATGATATGGCGAAGCCCAAAAGGGTTCATCATCCACATCCCTCTATGGAAATTGGGCCTAAGCGTCTCAAAATCAGAGGCCCAACATTCAGTGGCCCAATACCAGATCATATTGATTCCAAATGGGCCTAA 2610 42.49 MVEGRICSSREDRNGLALLKLKRLQPTNSETANKTSTVKNMMNRSGGDALRASTPCGVRLLGGNAETFSRSSGMSHERDVFSKRRVDKFEYDDLEWTKKIPECPVYSPSKEEFEDPLVYLQKIAPEASKYGICKIVSPLIASVTAGAVLMKEKPGFKFTTRVQPFRFAEWDTDDQVTFYMSGRNYTFRDFEKIANKIYARRYSSSGCLPASYMEKEFWREIACGKTESVEYACDVDGSAFSSSPSDELGTSKWNLKNLSRLPKSILRLLENPIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGQAALQFENVVREHVYTRDILSTGGEDGAFDVLLGKTTLFPPSILLDHKVPVYRAVQQPGEFVITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAVASQRYALLNRMPLIPHEELLCKEAMLLYTNSEFEDPHYASAELASHYSIKTSFVSLIRFQHRARWSLMKSRTCTGVSSNLHGTILCSLCKRDCYISYINCSCYGHPVCLRHDIKSLNFSCGSNRTLILCEDIFEMESAAQKFEQECGGQTNYVEELYSYPLLNLFKGADSDGYTPYCEIEVQLDSEFTAAAAAICRLGENECVSSSQPTQSCITENHRPEPSDLSLSCEASTLCSVVDYNETLSTTSHVPRNSSFEHSSDISNRVLEPSRNNCSSSSLGSVRASELTTLVDRESDDSDAEIFRVKRRPLKLDKKTGSDATSLKQFAGQDGRKRLKRIQTNGNSEHLKPLDCHGTDKSRYKFYPSTAHKDSAESDAIEKCGRGSIKCQRFSNEKLMNRQRAYELNNRRRERFQHDMAKPKRVHHPHPSMEIGPKRLKIRGPTFSGPIPDHIDSKWA* 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1095869 1104501 - CsaV3_3G001400.1 Csa03g00140 521045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00140 869 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 30 856 - -
Csa03g00140 869 SMART JmjN_1 102 145 IPR003349 -
Csa03g00140 869 Pfam JmjC domain, hydroxylase 280 403 IPR003347 -
Csa03g00140 869 MobiDBLite consensus disorder prediction 829 846 - -
Csa03g00140 869 Gene3D Cupin 103 464 - -
Csa03g00140 869 Pfam C5HC2 zinc finger 500 550 IPR004198 -
Csa03g00140 869 ProSiteProfiles JmjC domain profile. 250 420 IPR003347 -
Csa03g00140 869 SMART cupin_9 250 420 IPR003347 -
Csa03g00140 869 MobiDBLite consensus disorder prediction 829 869 - -
Csa03g00140 869 ProSiteProfiles JmjN domain profile. 103 144 IPR003349 -
Csa03g00140 869 MobiDBLite consensus disorder prediction 726 764 - -
Csa03g00140 869 Pfam jmjN domain 104 136 IPR003349 -
Csa03g00140 869 PANTHER LYSINE-SPECIFIC DEMETHYLASE 30 856 - -
Csa03g00140 869 MobiDBLite consensus disorder prediction 660 692 - -
Csa03g00140 869 SUPERFAMILY Clavaminate synthase-like 181 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00140 - - - csv:101211852 1768.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00920 Csa-Chr1:5746354 Csa03g00140 Csa-Chr3:1095869 6.20E-79 transposed
Csa01g02670 Csa-Chr1:23723039 Csa03g00140 Csa-Chr3:1095869 7.58E-57 transposed
Csa02g00757 Csa-Chr2:6267469 Csa03g00140 Csa-Chr3:1095869 1.24E-60 transposed
Csa05g00286 Csa-Chr5:1780186 Csa03g00140 Csa-Chr3:1095869 1.09E-07 transposed
Csa06g02272 Csa-Chr6:20361409 Csa03g00140 Csa-Chr3:1095869 6.63E-13 transposed
Csa07g01613 Csa-Chr7:16647690 Csa03g00140 Csa-Chr3:1095869 6.43E-43 transposed
Csa03g00140 Csa-Chr3:1095869 Csa03g04583 Csa-Chr3:39897098 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g719 . . . . . . . . . Cmo16g01231 . . . . . Cpe14g00981 . . . . . . . . . . . . . . . Cone8ag0485 . . . Lsi07g01171 . . Cme06g02447 . Blo19g00246 . . Bpe08g00806 . . . . . . . Cma16g01181 . Car16g01115 . . . . . . . . . . . . . . . . . Csa03g00140 Chy06g02167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31076 PF02373 JmjC 1.80E-39 CL0029 Csa TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00140 Csa_Chr03 FPKM 0.0 0.036092 0.280969 0.095785 0.338156 0.0 0.281844 0.0 0.0 0.0