Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00149 ATGAGCTTTCAAGATATCGAGGCTGGTCGCCCCTTTGCTTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCTACGCAAGCTGTTGCTTCCGGTATATTTCAGATTAATACTGCTGTTGCTACGTTTCAAAGGCTTGTTAATACCTTAGGTACACCAAAGGATACGCCTGAGCTACGCGAGAAGCTGAGAAATTTCTGTTCGTCGAGAAGATCTGCATGGGAGATATACATGGTTTGGACTGGGCCATCTTGTCCTTGGGGGAAGGGTATCCTATTCCTACATTTCAATGCAGTTCCAGTTTCTAGAGCTCTAAGTGTTTGTCTCTCTGCAGTTTTGTTGGGAGCAGTATTGGAAGATAACAGAAACTATCTGAGATATTGTCAGTCCACTCGTTTGGTTTCTTCTAGTGGTTTGAAGCCTCTTGGGTTAAGAGATGAGAATAACGATGTAGGGAAGAAGTTGTTTGATTTCTTCTTGTGTACTCTTGGGGAAATACCACTTGGCTTTGAAAGGCACAAGACGAGGTTACATATTGGACAGTTGGTTAAAGACACCTCTGCTAAACTTAAACAAGCCAGTGATATAGATCATCATGCTGAAGTGAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAAGAGTTTCAGAAGGCTCAACGACTTGCAGCCGAGAGGGAAACAGCATATTCACCTTTTGTTCCCCCAACTGTTCTACCTTCTAGCTACACAGCTTGGGAGGCAGATGCAAGCTCAGAAAAGAATCTCGAACAGCGTGCCCTTCTTGTGGAATCCAGGAGGCAAGAGGTCTTGCTGTTGGACAATGAAATAGCCTTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGCATTCATGAAATCCAGCAGCAAATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCAGTTCTAGTTCATGAACAGGGGGCCATGATTGATGATATTGGATCCAACATAGAGGGGGCACATGCTGCAACGTCACAGGGAACAACCCAGCTTGTAAAAGCTTCAAAGACACAAAGATCGAATTCATCTCTGTGCCTCTGTATTGCAAGTCCTGGGCTATTAGCGGACGGTACAAAGTCTTCATTTAGTTCTGATGTTCGCATTAGGATAGGAGGGCAAAAACTCATAGGAGGGTAG 1191 43.66 MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLRNFCSSRRSAWEIYMVWTGPSCPWGKGILFLHFNAVPVSRALSVCLSAVLLGAVLEDNRNYLRYCQSTRLVSSSGLKPLGLRDENNDVGKKLFDFFLCTLGEIPLGFERHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYSPFVPPTVLPSSYTAWEADASSEKNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGAHAATSQGTTQLVKASKTQRSNSSLCLCIASPGLLADGTKSSFSSDVRIRIGGQKLIGG* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1148834 1152437 + CsaV3_3G001490.1 Csa03g00149 521054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00149 396 Pfam SNARE domain 327 366 IPR000727 -
Csa03g00149 396 PANTHER SYNTAXIN 175 364 IPR045242 -
Csa03g00149 396 CDD SNARE_Qa 293 351 - -
Csa03g00149 396 Gene3D - 284 372 - -
Csa03g00149 396 Gene3D - 21 74 - -
Csa03g00149 396 Gene3D - 171 242 - -
Csa03g00149 396 SMART tSNARE_6 285 352 IPR000727 -
Csa03g00149 396 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 290 352 IPR000727 -
Csa03g00149 396 PANTHER SYNTAXIN 5 66 IPR045242 -
Csa03g00149 396 PANTHER SYNTAXIN OF PLANTS PROTEIN 175 364 - -
Csa03g00149 396 PANTHER SYNTAXIN OF PLANTS PROTEIN 5 66 - -
Csa03g00149 396 ProSitePatterns Syntaxin / epimorphin family signature. 296 335 IPR006012 GO:0005484|GO:0006886|GO:0016020
Csa03g00149 396 SUPERFAMILY t-snare proteins 173 345 IPR010989 GO:0016020|GO:0016192
Csa03g00149 396 Pfam Syntaxin-like protein 31 67 IPR006011 GO:0016020
Csa03g00149 396 Pfam Syntaxin-like protein 174 239 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00149 Csa-Chr3:1148834 Csa03g04004 Csa-Chr3:34985908 1.24E-09 dispersed
Csa03g00149 Csa-Chr3:1148834 Csa03g03501 Csa-Chr3:31360235 1.77E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00149 - K08488 csv:101207682 338.576