Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00150 ATGGACGGGACTGCTAATGGCTGTGATTCTGGATTGGCTTCCGGGAGTGGAAACTCTCATCCGACGGTTCCGGCTCCTATTACTAATTCTAGCGCGCCTCCACCGTTTCTGAGTAAGACATATGATATGGTGGATGACCCGGCTACCGATGCGGTTGTGTCCTGGAGCCCTACCAATAATAGTTTTGTGGTTTGGAATCCGCCTGAGTTCGCTAGGGATCTTTTGCCCAAATACTTCAAGCATAATAACTTCTCCAGTTTCGTCAGGCAGCTCAACACTTATGGATTCAGGAAAGTTGATCCAGACCGTTGGGAATTTGCTAACGAAGGCTTCTTAAGAGGTCAGAAACATCTGCTTAAGAGTATTACCCGGCGAAAACCTGTCCATGGGCAAAGTCAGCAACAACCACAGCAGTCTCACGGACAAAGTTCCTCAGTTGGAGCTTGTGTGGAAGTTGGTAAGTTTGGTTTGGAGGAAGAGGTTGAGAGGCTTAAAAGAGACAAAAATGTACTCATGCAGGAACTTGTGAGACTGAGGCAGCAGCAACAGACTACTGACAACCAGCTGCAAACTATGGTACAGCGTCTACAGGGGATGGAGCAGCGACAACAGCAGATGATGTCATTCCTTGCCAAGGCTGTGCAGAGCCCTGGCTTTTTGGCTCAGTTTGTGCAGCAGCAAAATGAAAGTACTAGACGCATAAGTGAGGCTAATAAAAAGCGAAGGCTAAAGCAGGATGGAATTGCCGAGTCTGATCATTCTCCTGTTCCAGATGGGCAAATTGTGAAGTATCAACCTCTCATGAATGAGGCAGCAAAAACAATGCTGAGGCAGATAATGAAAGTGGATACTTCACATTTGGAACCATCGAACCACAATACCGACAATTTTCTAATTCGTGATGGTTTGCAATCGCAGTGTGCAGCAATGGACAATGGGAACTCTTCCAGTTCTGTATCAGGCGTGACTCTTCAAGAGGTACCTCCAACCTCATCTTTTAATTCAGTTGCTTCTGGTGTTCCTCATGGCCCCTCAACAACCAAATCAGAAATCCAATCGTCACCTCAAGCTACAAATTCTGACAACATTTCAGCTTCTCCCTTTGCTCTTAACGCCGTGCGGGGTCCAGGGGCACGAGAAGCTTCTTCCTTATCAGTTTCTGAGACAGATGTAATAATGCCTGAGCTTTCCCATTTATCTGAAATGGTGTCTGAGAACATTCTTGATGTTCCTGAAGTGGATTATAGGGTGCCTGAGGCAGGAAATGGTGCATTTATAAGTCCGAATTTTTTGGATGCCAACGGAACTATTCCTATAGATATTGATAACATGTCCCCTGATGCTGACATCGATGCCTTGCTAGATAATTCCAACTTTTGGGATGATTTGCTTGTGCAAAGTCCATGTCAGGATGATGAGGTTGATTTTCTGGTTGGAGGAGGGTTACCAAAGACAAACGATATGCAACTGGCAGAAAATGCATGGGACAAATCTAAACATGTGGATAAACTTACAGAACAGATGGGCCTTCTCACTTCAGAAATTAAAAGGGTTTGA 1557 45.28 MDGTANGCDSGLASGSGNSHPTVPAPITNSSAPPPFLSKTYDMVDDPATDAVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPVHGQSQQQPQQSHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESTRRISEANKKRRLKQDGIAESDHSPVPDGQIVKYQPLMNEAAKTMLRQIMKVDTSHLEPSNHNTDNFLIRDGLQSQCAAMDNGNSSSSVSGVTLQEVPPTSSFNSVASGVPHGPSTTKSEIQSSPQATNSDNISASPFALNAVRGPGAREASSLSVSETDVIMPELSHLSEMVSENILDVPEVDYRVPEAGNGAFISPNFLDANGTIPIDIDNMSPDADIDALLDNSNFWDDLLVQSPCQDDEVDFLVGGGLPKTNDMQLAENAWDKSKHVDKLTEQMGLLTSEIKRV* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1154596 1159734 - CsaV3_3G001500.1 Csa03g00150 521055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00150 518 Gene3D - 28 126 IPR036388 -
Csa03g00150 518 MobiDBLite consensus disorder prediction 231 260 - -
Csa03g00150 518 ProSitePatterns HSF-type DNA-binding domain signature. 75 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Csa03g00150 518 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 10 503 - -
Csa03g00150 518 SMART hsfneu3 32 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Csa03g00150 518 Coils Coil 154 181 - -
Csa03g00150 518 MobiDBLite consensus disorder prediction 126 146 - -
Csa03g00150 518 SUPERFAMILY Winged helix DNA-binding domain 32 125 IPR036390 -
Csa03g00150 518 MobiDBLite consensus disorder prediction 233 251 - -
Csa03g00150 518 MobiDBLite consensus disorder prediction 9 31 - -
Csa03g00150 518 MobiDBLite consensus disorder prediction 124 146 - -
Csa03g00150 518 MobiDBLite consensus disorder prediction 309 363 - -
Csa03g00150 518 MobiDBLite consensus disorder prediction 1 31 - -
Csa03g00150 518 Pfam HSF-type DNA-binding 36 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Csa03g00150 518 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 503 IPR027725 -
Csa03g00150 518 PRINTS Heat shock factor (HSF) domain signature 36 59 IPR000232 GO:0003700|GO:0006355|GO:0043565
Csa03g00150 518 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Csa03g00150 518 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00150 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101207437 994.186
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02297 Csa-Chr1:20072867 Csa03g00150 Csa-Chr3:1154596 2.61E-59 dispersed
Csa02g00128 Csa-Chr2:893155 Csa03g00150 Csa-Chr3:1154596 2.60E-51 dispersed
Csa03g00150 Csa-Chr3:1154596 Csa03g01291 Csa-Chr3:9871823 2.05E-85 dispersed
Csa06g02938 Csa-Chr6:25449530 Csa03g00150 Csa-Chr3:1154596 3.04E-45 dispersed
Csa06g03726 Csa-Chr6:29767171 Csa03g00150 Csa-Chr3:1154596 3.96E-55 dispersed
Csa03g00150 Csa-Chr3:1154596 Csa07g01697 Csa-Chr7:17491759 1.35E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g705 Blo02g00985 . Bda06g01262 Bda08g00638 . . . . Cmo06g00645 Cmo16g01225 . . . . Sed10g1395 Cpe14g00974 . Bhi11g00015 Tan08g0173 Cmetu05g1605 . . Mch10g1679 . Cla10g00139 Cam10g0138 Cec10g0148 Cco10g0148 Clacu10g0142 Cmu10g0989 Cre10g0400 . . . . Lsi07g01178 . . Cme06g02455 . . . . . . Bma05g00705 . . . . Cma06g00639 Cma16g01175 Car06g00570 Car16g01108 . . . . . . . . . . . . . . . . . Csa03g00150 Chy06g02159 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g01291 . 7 237 HSF AT4G17750 53.7 8.3e-62 235.0
Csa07g01697 . 41 281 HSF AT4G17750 51.0 1.3e-59 227.6
Csa02g01831 . 43 243 HSF AT4G17750 53.2 3.0e-59 226.5
Csa02g01172 . 26 226 HSF AT4G17750 55.8 1.9e-58 223.8
Csa01g02297 CCT,ECH 13 191 HSF AT4G17750 50.3 1.2e-44 177.9
Csa02g01940 CCT 20 118 HSF AT4G17750 71.7 5.8e-39 159.1
Csa04g02421 CCT 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
Csa05g00316 CCT 382 505 HSF AT4G17750 60.5 2.2e-38 157.1
Csa03g00150 . 21 517 HSF AT5G16820 51.2 1.7e-99 360.1
Csa03g01291 . 38 242 HSF AT5G16820 56.5 1.3e-59 227.6
Csa02g01172 . 39 226 HSF AT5G16820 57.1 4.1e-58 222.6
Csa07g01697 . 42 251 HSF AT5G16820 54.7 1.2e-57 221.1
Csa02g01831 . 44 243 HSF AT5G16820 53.1 1.9e-55 213.8
Csa03g00150 . 13 514 HSF AT1G32330 54.1 8.2e-123 437.6
Csa03g01291 . 26 227 HSF AT1G32330 53.5 1.7e-59 227.3
Csa07g01697 . 30 247 HSF AT1G32330 52.7 2.2e-59 226.9
Csa02g01172 . 27 226 HSF AT1G32330 54.1 2.4e-58 223.4
Csa02g01831 . 32 224 HSF AT1G32330 54.6 5.6e-55 212.2
Csa06g01363 . 8 148 HSF AT1G32330 55.7 1.6e-41 167.5
Csa02g01940 CCT 20 117 HSF AT1G32330 71.4 3.7e-38 156.4
Csa03g01291 . 38 241 HSF AT3G02990 56.2 6.6e-61 231.9
Csa07g01697 . 42 259 HSF AT3G02990 54.5 1.5e-60 230.7
Csa02g01172 . 39 226 HSF AT3G02990 56.3 6.9e-58 221.9
Csa02g01831 . 44 243 HSF AT3G02990 52.2 1.3e-56 217.6
Csa03g01291 . 15 270 HSF AT2G26150 52.5 4.9e-69 258.5
Csa07g01697 . 30 246 HSF AT2G26150 56.4 7.8e-67 251.1
Csa03g00150 . 29 243 HSF AT2G26150 58.8 6.4e-61 231.5
Csa02g01172 . 29 232 HSF AT2G26150 51.2 4.2e-60 228.8
Csa02g00041 . 48 248 HSF AT2G26150 51.7 7.8e-51 198.0
Csa06g01363 . 5 118 HSF AT2G26150 60.5 3.8e-37 152.5
Csa03g03376 . 116 357 HSF AT5G03720 56.9 1.1e-70 264.2
Csa03g01069 . 3 460 HSF AT4G13980 51.8 3.6e-115 412.1
Csa06g01363 . 4 183 HSF AT4G13980 51.7 8.7e-45 178.3
Csa07g01697 . 1 368 HSF AT3G22830 50.1 3.0e-94 342.4
Csa03g01291 . 21 347 HSF AT3G22830 52.2 1.4e-91 333.6
Csa02g01831 . 32 241 HSF AT3G22830 55.2 9.5e-64 241.1
Csa03g00150 . 29 242 HSF AT3G22830 59.3 3.6e-63 239.2
Csa02g00041 . 48 260 HSF AT3G22830 50.2 6.4e-52 201.8
Csa07g01697 . 29 343 HSF AT3G51910 50.9 1.4e-71 266.5
Csa02g01172 . 26 323 HSF AT3G51910 53.0 4.6e-70 261.5
Csa03g01291 . 26 238 HSF AT3G51910 58.4 3.5e-62 235.3
Csa02g01831 . 32 224 HSF AT3G51910 56.5 5.4e-55 211.5
Csa02g01831 . 32 231 HSF AT3G63350 52.7 2.9e-51 199.1
Csa06g01363 . 5 152 HSF AT3G63350 54.8 5.6e-39 158.3
Csa05g01128 . 12 283 HSF AT1G67970 51.1 1.0e-67 254.2
Csa07g01697 . 43 233 HSF AT1G67970 51.0 4.8e-46 182.2
Csa03g01695 CCT 17 190 HSF AT4G36990 50.9 2.3e-40 162.9
Csa05g00316 CCT 404 725 HSF AT4G11660 52.6 9.7e-79 290.8
Csa04g02421 CCT 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Csa02g01940 CCT 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Csa06g02938 . 2 100 HSF AT4G11660 73.7 9.5e-42 167.9
Csa01g03238 . 26 119 HSF AT4G11660 70.2 4.1e-37 152.5
Csa03g00150 . 31 126 HSF AT4G11660 68.8 7.0e-37 151.8
Csa03g03764 . 22 115 HSF AT4G11660 72.3 2.1e-36 150.2
Csa04g01086 . 37 215 HSF AT2G41690 52.7 3.7e-47 185.3
Csa03g03764 . 22 221 HSF AT2G41690 50.2 4.9e-47 184.9
Csa02g01940 CCT 19 373 HSF AT1G46264 51.4 2.4e-87 319.3
Csa04g02421 CCT 19 327 HSF AT1G46264 54.6 5.2e-87 318.2
Csa01g03238 . 18 200 HSF AT1G46264 53.8 1.1e-52 204.1
Csa03g00150 . 31 138 HSF AT1G46264 72.2 2.6e-41 166.4
Csa06g01363 . 5 105 HSF AT1G46264 68.3 1.7e-37 153.7
Csa02g01172 . 32 146 HSF AT1G46264 59.1 3.8e-37 152.5
Csa07g01697 . 33 142 HSF AT1G46264 63.6 1.1e-36 151.0
Csa01g01715 CCT 10 292 HSF AT3G24520 50.9 1.6e-64 243.4
Csa03g01291 . 7 237 HSF AT4G17750 53.7 8.3e-62 235.0
Csa07g01697 . 41 281 HSF AT4G17750 51.0 1.3e-59 227.6
Csa02g01831 . 43 243 HSF AT4G17750 53.2 3.0e-59 226.5
Csa02g01172 . 26 226 HSF AT4G17750 55.8 1.9e-58 223.8
Csa01g02297 CCT,ECH 13 191 HSF AT4G17750 50.3 1.2e-44 177.9
Csa02g01940 CCT 20 118 HSF AT4G17750 71.7 5.8e-39 159.1
Csa04g02421 CCT 20 118 HSF AT4G17750 69.7 2.2e-38 157.1
Csa05g00316 CCT 382 505 HSF AT4G17750 60.5 2.2e-38 157.1
Csa03g00150 . 21 517 HSF AT5G16820 51.2 1.7e-99 360.1
Csa03g01291 . 38 242 HSF AT5G16820 56.5 1.3e-59 227.6
Csa02g01172 . 39 226 HSF AT5G16820 57.1 4.1e-58 222.6
Csa07g01697 . 42 251 HSF AT5G16820 54.7 1.2e-57 221.1
Csa02g01831 . 44 243 HSF AT5G16820 53.1 1.9e-55 213.8
Csa03g00150 . 13 514 HSF AT1G32330 54.1 8.2e-123 437.6
Csa03g01291 . 26 227 HSF AT1G32330 53.5 1.7e-59 227.3
Csa07g01697 . 30 247 HSF AT1G32330 52.7 2.2e-59 226.9
Csa02g01172 . 27 226 HSF AT1G32330 54.1 2.4e-58 223.4
Csa02g01831 . 32 224 HSF AT1G32330 54.6 5.6e-55 212.2
Csa06g01363 . 8 148 HSF AT1G32330 55.7 1.6e-41 167.5
Csa02g01940 CCT 20 117 HSF AT1G32330 71.4 3.7e-38 156.4
Csa03g01291 . 38 241 HSF AT3G02990 56.2 6.6e-61 231.9
Csa07g01697 . 42 259 HSF AT3G02990 54.5 1.5e-60 230.7
Csa02g01172 . 39 226 HSF AT3G02990 56.3 6.9e-58 221.9
Csa02g01831 . 44 243 HSF AT3G02990 52.2 1.3e-56 217.6
Csa03g01291 . 15 270 HSF AT2G26150 52.5 4.9e-69 258.5
Csa07g01697 . 30 246 HSF AT2G26150 56.4 7.8e-67 251.1
Csa03g00150 . 29 243 HSF AT2G26150 58.8 6.4e-61 231.5
Csa02g01172 . 29 232 HSF AT2G26150 51.2 4.2e-60 228.8
Csa02g00041 . 48 248 HSF AT2G26150 51.7 7.8e-51 198.0
Csa06g01363 . 5 118 HSF AT2G26150 60.5 3.8e-37 152.5
Csa03g03376 . 116 357 HSF AT5G03720 56.9 1.1e-70 264.2
Csa03g01069 . 3 460 HSF AT4G13980 51.8 3.6e-115 412.1
Csa06g01363 . 4 183 HSF AT4G13980 51.7 8.7e-45 178.3
Csa07g01697 . 1 368 HSF AT3G22830 50.1 3.0e-94 342.4
Csa03g01291 . 21 347 HSF AT3G22830 52.2 1.4e-91 333.6
Csa02g01831 . 32 241 HSF AT3G22830 55.2 9.5e-64 241.1
Csa03g00150 . 29 242 HSF AT3G22830 59.3 3.6e-63 239.2
Csa02g00041 . 48 260 HSF AT3G22830 50.2 6.4e-52 201.8
Csa07g01697 . 29 343 HSF AT3G51910 50.9 1.4e-71 266.5
Csa02g01172 . 26 323 HSF AT3G51910 53.0 4.6e-70 261.5
Csa03g01291 . 26 238 HSF AT3G51910 58.4 3.5e-62 235.3
Csa02g01831 . 32 224 HSF AT3G51910 56.5 5.4e-55 211.5
Csa02g01831 . 32 231 HSF AT3G63350 52.7 2.9e-51 199.1
Csa06g01363 . 5 152 HSF AT3G63350 54.8 5.6e-39 158.3
Csa05g01128 . 12 283 HSF AT1G67970 51.1 1.0e-67 254.2
Csa07g01697 . 43 233 HSF AT1G67970 51.0 4.8e-46 182.2
Csa03g01695 CCT 17 190 HSF AT4G36990 50.9 2.3e-40 162.9
Csa05g00316 CCT 404 725 HSF AT4G11660 52.6 9.7e-79 290.8
Csa04g02421 CCT 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Csa02g01940 CCT 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Csa06g02938 . 2 100 HSF AT4G11660 73.7 9.5e-42 167.9
Csa01g03238 . 26 119 HSF AT4G11660 70.2 4.1e-37 152.5
Csa03g00150 . 31 126 HSF AT4G11660 68.8 7.0e-37 151.8
Csa03g03764 . 22 115 HSF AT4G11660 72.3 2.1e-36 150.2
Csa04g01086 . 37 215 HSF AT2G41690 52.7 3.7e-47 185.3
Csa03g03764 . 22 221 HSF AT2G41690 50.2 4.9e-47 184.9
Csa02g01940 CCT 19 373 HSF AT1G46264 51.4 2.4e-87 319.3
Csa04g02421 CCT 19 327 HSF AT1G46264 54.6 5.2e-87 318.2
Csa01g03238 . 18 200 HSF AT1G46264 53.8 1.1e-52 204.1
Csa03g00150 . 31 138 HSF AT1G46264 72.2 2.6e-41 166.4
Csa06g01363 . 5 105 HSF AT1G46264 68.3 1.7e-37 153.7
Csa02g01172 . 32 146 HSF AT1G46264 59.1 3.8e-37 152.5
Csa07g01697 . 33 142 HSF AT1G46264 63.6 1.1e-36 151.0
Csa01g01715 CCT 10 292 HSF AT3G24520 50.9 1.6e-64 243.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004373 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31077 PF00447 HSF_DNA-bind 2.80E-33 CL0123 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00150 Csa_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0