Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00151 ATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCCCCAACTTTTGGCCTTGGCCGAGAGAGGAAGAGGCTTCCTAGAGTGGCCACTGTGGCTGGTGTCTTGTCTGAGCTTGATGATGATAGCTGTAACAGCACTGGCTCGGATGCCCCTTCGTCGGTGTCACAAGACCGGATGATCATTGTTGGAAATCAGCTCCCTATTCGAGCGAATCGAGACGAGAATGGAGACTGGGAGTTTAGTATGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGGCTCGGAGAAGATGTGGAAGTGATTTATATTGGTTGTCTTAGAGAGGAGGTTGATCCAAGGGAGCAAGACGATGTTGCACAAACTCTTTTGGACCGATTCAAGTGCGTCCCGACGTTCCTTCCTCCGGAGCTTTTTAGTAAATTTTATCATGGATTCTGCAAGCAACATTTATGGCCACTGTTTCACTATATGCTTCCTCTGTCCCCGGATCTTGGTGGCCGATTTGATCGGTCTCTTTGGCAAGCGTATCTTTCAGTGAATAAGATATTTGCAGATAAAGTTATGGAAGTGATCAGTCCTGATGATGACTTTGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGAGTGAAACTTGGATTCTTCCTACACAGTCCATTTCCTTCATCTGAGATTTATCGAACACTTCCCGTTAGAGATGAACTTCTTCGGGCACTATTGAACTCTGATCTTATTGGCTTCCATACGTTTGATTATGCTAGGCATTTTTTGTCTTGCTGCAGCAGAATGCTTGGTCTGTCTTACCAATCTAAGCGAGGTTACATCGGGCTTGAATACTATGGTCGTACCGTGAGTATTAAGATTCTTCCTGTTGGTATTCATATAGGCCAACTCCAAAATGTTTTGAATCTCCCTGAGACTGTATCTAAAGTCGCAGAACTGCAAGACCGGTTCAAGGGTCAAACTGTTTTGCTTGGGGTTGATGATATGGACATTTTTAAGGGGATCAGCTTGAAACTTTTGGCATTTGAACAATTGCTCCGACAACACCCTGAGAGATGGGGTAAAGCTGTGTTAGTACAGATTGCGAACCCTGCAAGAGGCAGAGGCAAAGATGTACAGGAGGTTGTGGCTGAAACTACTGCAACAGTGGATAGAATCAACACAACATTCAGAAGGCCAGGATACGAGCCTGTTGTTTTGATAAACACTCCCTTGCAGTTTTACGAGCGAATCGCTTACTACGCAATTGCTGAGTGCTGCCTTGTTACTGCAGTGAGAGATGGGATGAATCTTATACCTTACGAATATATTATATGTCGACAAGGCAATGAGAAGCTTGACGATGTTCTTGGGCTAAATCCTTCAACTGCAAAGAAGAGCATGTTAGTCTTGTCTGAGTTTATTGGGTGTTCCCCTTCTCTCAGTGGAGCTATTCGGGTTAACCCATGGAATATTGAAGCTGTCACCGAAGCAATGGATTCTGCACTGGTAATCCCCGAGGCAGAAAAGCAATTGCGACATGAAAAGCATTATAGGTATGTTAGCACACATGATGTGGCATATTGGGCACGCAGCTTTCTGCAGGATCTGGGCAGGGCGTGTAGAGACCATTCAATGAGGAGGTGCTGGGGCATAGGTTTTGGCTTAGGATTTCGGGTTATTGCCCTGGATCCAGATTTTAGGAAGCTTTCAGTTGATCATATTGTTTCAGTGTATAAGAGAACAGGCCACCGAGCAATTTTGTTAGATTATGATGGTATCATGACGCTTCCTGGATCAATTAGCATGAATCCAACTTCAGAAGCCCTTGGAATCTTAAACAACTTGTGTAAAGATCCTAAAAATGTTGTGTTCCTTGTTAGTGGGAAGGACCGAAAAACTTTGACTGAATGGTTTTCACCATGCGAAAAGCTTGGACTAGCTGCAGAACATGGTTTTTATCTTAGGCCAAATCAAAATGCAGATTGGGAGACATGTGTAGCTGTGACCGATTTTGACTGGAAACAGATTGCAGAACCCGTTATGCAATTGTATACTGAGACAACTGATGGCTCTACAATTGAAACAAAAGAGAGTGCGCTTGTTTGGAACTATCTTTATGCGGATCCTGATTTCGGATCGTGCCAGGCCAAGGAACTTTTAGATCACCTTGAAAGTGTTCTAGCCAATGAACCCGTTTCTGTCAAGAGTGGCCAACACATTGTAGAAGTCAAACCTCAGGGTGTAAACAAGGGCATTGTAGCAGAATATCTCTTGCAAACAATGAAGGAGAAGGGAATGCTTCCCGATTTCGTTCTGTGCATTGGAGACGACAGGTCAGATGAGGACATGTTCGAGGTGATAATGAATGCAAAAGCCAGCCTTTCCCCAGGTGCCGAAGTGTTCGGTTGCACCGTTGGCCAGAAACCGAGCAAGGCCAGGTATTACTTGGAAGACACACACGAAATCTTGAGAATGTTACAGGGTCTTACCCACGCGTCTGAGCACGCCACTAGAGCTGCTCCGCAGACGACGGCTCGTAGAGTGGTAATTGCAGAGAGTAAATAA 2595 44.47 MVSRSYSNLLELASGGCSPTFGLGRERKRLPRVATVAGVLSELDDDSCNSTGSDAPSSVSQDRMIIVGNQLPIRANRDENGDWEFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDDVAQTLLDRFKCVPTFLPPELFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELQDRFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTATVDRINTTFRRPGYEPVVLINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDDVLGLNPSTAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPDFRKLSVDHIVSVYKRTGHRAILLDYDGIMTLPGSISMNPTSEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGFYLRPNQNADWETCVAVTDFDWKQIAEPVMQLYTETTDGSTIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAEYLLQTMKEKGMLPDFVLCIGDDRSDEDMFEVIMNAKASLSPGAEVFGCTVGQKPSKARYYLEDTHEILRMLQGLTHASEHATRAAPQTTARRVVIAESK* 865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1167633 1172345 + CsaV3_3G001510.1 Csa03g00151 521056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00151 864 CDD HAD_TPP 595 831 - -
Csa03g00151 864 Gene3D Glycogen Phosphorylase B; 315 531 - -
Csa03g00151 864 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 846 IPR001830 GO:0003824|GO:0005992
Csa03g00151 864 Gene3D Glycogen Phosphorylase B; 56 314 - -
Csa03g00151 864 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824|GO:0005992
Csa03g00151 864 TIGRFAM T6PP: trehalose-phosphatase 593 840 IPR003337 GO:0003824|GO:0005992
Csa03g00151 864 Pfam Trehalose-phosphatase 597 829 IPR003337 GO:0003824|GO:0005992
Csa03g00151 864 SUPERFAMILY HAD-like 594 839 IPR036412 -
Csa03g00151 864 Gene3D - 723 854 IPR023214 -
Csa03g00151 864 Gene3D - 593 710 IPR023214 -
Csa03g00151 864 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 596 798 IPR006379 -
Csa03g00151 864 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 846 - -
Csa03g00151 864 CDD GT20_TPS 63 546 IPR001830 GO:0003824|GO:0005992
Csa03g00151 864 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00164 Csa-Chr1:1067140 Csa03g00151 Csa-Chr3:1167633 0 dispersed
Csa01g02281 Csa-Chr1:19948842 Csa03g00151 Csa-Chr3:1167633 7.73E-146 dispersed
Csa03g00151 Csa-Chr3:1167633 Csa06g03720 Csa-Chr6:29732744 0 dispersed
Csa03g00151 Csa-Chr3:1167633 Csa07g00478 Csa-Chr7:3465683 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00151 K16055 - csv:101207192 1734.54