Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00155 ATGGGGAACAACAAAATCACTGACCCCAAAAATCCCTCTGAAGAAACCCCCACTGTTGCTTCTACCTTCAGCGTTTTCGATACTCTCTTCGGTAGCGCCGGTGTTGAAAACCCCCCCGTTTCTATCTTCTCCACTGACAACCCTTTTCGTAGGAAAGCTTCAGATTCTGTTCCTCCTCCACCTGCTGAAATCAGTAGGAAGAAGGGCAAGGACAAAAGGGTTGGTATTGATTTGGATTCTACTGAAGGTGTTAAAACTTCGTCGGAGATTAAGAAATCTAAGAAGAAGGAGAAGAAGAAGTCTCTGGACCGCGAATTGGATAATGTAGATGATGATGGAGAAAGGGGTTTCGAATCGCAAGGGGGATTGAAGGATAGTAGTAAGAAGAAAGGTACTGTTTTGGGCTCTGAAACTTCAGAAAAGAGTCATGGTTTTGAAGGGAGTAAACTCGGTGAGAATGTTAAATTGATGAAAGAGAGGAAGAAGAGGAAGAGAGATGAACTTGAGAGAGAGTATGAAGCCAAAAAGTATGGTGTATCAGATGTAGCTGAAGATGAAGTAGAAGGTTCAGGGGGGAATGTTGTTGGGAAGAAGAGAAAAGCATTGGATGATCCTTCAGAGATGTTGGTTACAAAGGAAGGATTTGATGATGAAAGTAAGCTTTTGAGAACTGTGTTTGTTGGGAACTTGCCATTGAAAGTGAAGAAGAAAGCTTTAGCCAAGGAGTTTAGCCAATTTGGAGAGATAGATTCTGTTAGGATCCGGTCTGTACCAATTGACATTGCAAATAGCAAAAAACCAAGGAAGGGGGCAATCATTTCTAAGAAACTCAATGAAGCTGCGGACAGTTCACATGCATACGTTGTTTTTAAAACAGAGGAATCAGCACAGGCTTCTTTGTCCCATAACATGGCTGTGTTTGCAGGAAATCATATACGAGTTGACAGAGCATGCCCACCCCATAAAAAGTTGAAAGTGGGAAATGGGCCAATCTATGATCCCAAGAGAACTGTTTTTGTGGGTAACCTTCCATTTGATGTAAAGGATGAAGAATTGTATCAATTATTTTGCGGAATTGACAATATGGGATCCAGTGTTGAGGCTGTTCGGGTCATTAGAGATCCCAAGGTGAACGTAGGGAAGGGCTTTGCGTATGTCTTCTTTAAAACAAGGGAAGCAGCAAACTCTGTAGTTAATAATCAACTACTAGAGTTGCGTGGTCGGACGCTGAGGCTCTTTCATACCAAAACAAATCCAACATCCACTCCATTTAAGAAACGGAATAGACCACCTACAGAAGCTGATCGCACCCCAGCAAAGAAAAAGTATGTGGATTCAGGCTTAGGGACACCAGATAGCAGCAAGAGGGTAACACCAAAGGCAACCAATGTATCCTATCAGGGCTTGCGTGCGAGCAAAAGCGGTTCCCAGAAGAAGATCCATACTAAAGGCAGCAGTACGAAATGGCCGAAGTCACATTCAAACAGTAAAGAGAAGCCAATAGATCACAAGAAGAGAAGAGGACCAGAGAAGACAAGTGAAAGAAAGGGTAAGAGACCAGCAGTTGCCAACAGAAAGGCTGTGGCGATGGCAACGAAAAATGGCATTGCAACACCGAAACAGACCGGATTGAAGCGCAAGTCTGATAGCCGAAGTCCAGGGAGCTCTCACAGGAATAAGAGAGTCAAAAGGTTTAGATAG 1701 43.39 MGNNKITDPKNPSEETPTVASTFSVFDTLFGSAGVENPPVSIFSTDNPFRRKASDSVPPPPAEISRKKGKDKRVGIDLDSTEGVKTSSEIKKSKKKEKKKSLDRELDNVDDDGERGFESQGGLKDSSKKKGTVLGSETSEKSHGFEGSKLGENVKLMKERKKRKRDELEREYEAKKYGVSDVAEDEVEGSGGNVVGKKRKALDDPSEMLVTKEGFDDESKLLRTVFVGNLPLKVKKKALAKEFSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLNEAADSSHAYVVFKTEESAQASLSHNMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFVGNLPFDVKDEELYQLFCGIDNMGSSVEAVRVIRDPKVNVGKGFAYVFFKTREAANSVVNNQLLELRGRTLRLFHTKTNPTSTPFKKRNRPPTEADRTPAKKKYVDSGLGTPDSSKRVTPKATNVSYQGLRASKSGSQKKIHTKGSSTKWPKSHSNSKEKPIDHKKRRGPEKTSERKGKRPAVANRKAVAMATKNGIATPKQTGLKRKSDSRSPGSSHRNKRVKRFR* 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1185458 1188728 - CsaV3_3G001550.1 Csa03g00155 521060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00155 566 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 225 257 IPR000504 GO:0003723
Csa03g00155 566 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 410 IPR000504 GO:0003723
Csa03g00155 566 MobiDBLite consensus disorder prediction 413 566 - -
Csa03g00155 566 CDD RRM1_RBM34 223 315 IPR034220 -
Csa03g00155 566 Coils Coil 92 112 - -
Csa03g00155 566 MobiDBLite consensus disorder prediction 99 169 - -
Csa03g00155 566 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 417 IPR000504 GO:0003723
Csa03g00155 566 MobiDBLite consensus disorder prediction 451 491 - -
Csa03g00155 566 Coils Coil 151 178 - -
Csa03g00155 566 SUPERFAMILY RNA-binding domain, RBD 331 429 IPR035979 GO:0003676
Csa03g00155 566 MobiDBLite consensus disorder prediction 33 169 - -
Csa03g00155 566 SUPERFAMILY RNA-binding domain, RBD 223 330 IPR035979 GO:0003676
Csa03g00155 566 Gene3D - 220 324 IPR012677 -
Csa03g00155 566 SMART rrm1_1 337 413 IPR000504 GO:0003723
Csa03g00155 566 SMART rrm1_1 224 315 IPR000504 GO:0003723
Csa03g00155 566 MobiDBLite consensus disorder prediction 64 91 - -
Csa03g00155 566 MobiDBLite consensus disorder prediction 413 427 - -
Csa03g00155 566 PANTHER RNA-BINDING PROTEIN 34 44 564 - -
Csa03g00155 566 Gene3D - 331 422 IPR012677 -
Csa03g00155 566 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 44 564 - -
Csa03g00155 566 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 319 IPR000504 GO:0003723
Csa03g00155 566 MobiDBLite consensus disorder prediction 492 521 - -
Csa03g00155 566 MobiDBLite consensus disorder prediction 428 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00155 K14837 NOP12; nucleolar protein 12 - csv:101206555 1069.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00155 Csa-Chr3:1185458 Csa03g01588 Csa-Chr3:11779608 1.27E-09 dispersed
Csa03g00155 Csa-Chr3:1185458 Csa03g02778 Csa-Chr3:26621162 9.52E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010480 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00155 Csa_Chr03 FPKM 5.572351 8.614619 9.652703 9.204497 6.075728 5.885438 4.687728 14.629436 16.991051 16.513496