Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00157 ATGGTGACGATCGAATCCCCACTTCCAATCATTTCTCCATACATTTCTTCTTCTTCCTCTTCTTCTGCCTCGAAATTATGCTTTAATAAACTTCCCTCCCCCATTAAGCTTCGAATTTCCTTCTCCTCCCCTCTCCTTTCCCTCAATCCCACAACCCCCATTTCCCCTACCTCTTTCAATTCATCGCGAAATCGCGGCGGCGGAGCCCGACTATGTTCTGCACTGCAAGAGGTCACTTTGGAGGAAGCTTCAGAGGAAAATCAGGATGTGAATCAGAAGAGGAAATTATATATCTTCAATTTACCTTGGTCTTTATCTGTTGTTGACATTAAGGAGCTCTTTGGACAATGCGGCACTGTCTCTGATGTTGAGATTATAAAGCAGAAAAATGGAAGAAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGAAATATCAGGAAGAGTTATAAAGGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCTCCACCAAAGCCTCCAGGTCCTCCTCCTGGAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCAAACAATCTCAGAGACTTCTTTTCTGAAAACTTTAACCCAATTGCAGCGAGGGTTGTCTTCGATAGTCCCGCTGGAAGATCTGCTGGTTATGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCTCAAACTGCACTTTCTTCTTTGGAGGGCAAGGAATTGATGGGAAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAATGAAGCAGAAACCCCAAAAGAAGACATTGTTGAAAGCCAACCTGAAGAATCATAG 867 42.91 MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFNSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1193830 1197425 - CsaV3_3G001570.1 Csa03g00157 521062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00157 288 Coils Coil 73 93 - -
Csa03g00157 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 268 IPR000504 GO:0003723
Csa03g00157 288 MobiDBLite consensus disorder prediction 267 288 - -
Csa03g00157 288 SUPERFAMILY RNA-binding domain, RBD 93 267 IPR035979 GO:0003676
Csa03g00157 288 MobiDBLite consensus disorder prediction 267 282 - -
Csa03g00157 288 Gene3D - 175 278 IPR012677 -
Csa03g00157 288 Gene3D - 57 174 IPR012677 -
Csa03g00157 288 PANTHER CHLOROPLAST, PUTATIVE-RELATED 1 279 - -
Csa03g00157 288 PANTHER OS02G0815200 PROTEIN 1 279 - -
Csa03g00157 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 262 IPR000504 GO:0003723
Csa03g00157 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 165 IPR000504 GO:0003723
Csa03g00157 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 171 IPR000504 GO:0003723
Csa03g00157 288 SMART rrm1_1 191 264 IPR000504 GO:0003723
Csa03g00157 288 SMART rrm1_1 95 167 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00157 - - - csv:101211116 513.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00157 Csa-Chr3:1193830 Csa03g03503 Csa-Chr3:31367836 1.15E-11 dispersed
Csa06g01516 Csa-Chr6:12739829 Csa03g00157 Csa-Chr3:1193830 9.08E-10 dispersed
Csa03g00157 Csa-Chr3:1193830 Csa07g02046 Csa-Chr7:19815206 1.72E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g678 . . . . . . . . . Cmo16g01221 . . . . Sed02g0123 Cpe14g00970 . Bhi11g00026 Tan01g2201 Cmetu06g1790 . . Mch10g1673 . Cla10g00148 Cam10g0144 Cec10g0153 Cco10g0153 Clacu10g0147 Cmu10g0994 Cre10g0405 . . . . Lsi07g01183 . . Cme06g02461 Blo03g00866 . . . Bpe08g00829 . . . . . . . Cma16g01171 . Car16g01104 . . . . . . . . . . . . . . . . . Csa03g00157 Chy06g02152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012628 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00157 Csa_Chr03 FPKM 41.417328 37.821671 37.544292 40.036579 7.967822 8.047328 7.039201 16.419111 20.622633 20.05035