Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00168 ATGGCTACCCATTTGGTTGATTCTCAAGAACTTGATCCATTTTTGGTTCCTCCGTTGGGAATTGAAGCCGGGTCTTGGCACTCGACTACTACCGAAGATGCCCTAACTCAACAATCTCTACTTCATTCTTCCTCTTGCCGTAACGGCAATTTTTCTTTTTCGCCTATGGATGCCTCTGCTAATCAGTCTTGGGGTTCTTCTTCGATAAACCCTACTGGGTCTTCGCCATTCTCAACTTATTCGTCTGATTCTGATGGACTCGACGCATTGCCTCCTCTGCCGGGATCGTCTTTGGAGTGGTCTACTTCAGAGGAAGCTTTCCCAGAAAATTCCGTGTCTGCTCAAGAAACCGAATCTCTATCTGCGGGTGCGGGACTTGCAAATTTGGGGAATACTTGTTTTATTAACGCAATCTTGCAGTGCCTCACTCATACTGCTCCATTTGTGGAGGGTCTTCGATCTGCTAATCATGATATGCCTTGTAACAGTGAAGGTTTTTGTGTCTTTTGTGCAATTCGAGATCATATCGAGCTCTCCTTAACTTCTCTGGGTGGGATTATCTCACCAGTGAAACTTGTTGATAACTTGAACTACTTCTCATCCTTTTTCTGGAGATACCAGCAGGAAGATGCCCATGAGTTCATGCAGTGCTTCTTGGATAAACTTGAAAGATGCATGGTTTCAGAAGGAAAGGATCGAGTTTCTTCAGAGGATGATGATCTAGTGAATAAGGTGTTTGGTGGTCGTCTCATAAGCAATCTTTGCTGCTGTAATTGTGGCCATTGTTCCGAAACCCATGAGCCTTTGGTTGACTTGAGTTTGGAGATTGAGAATGTGGACTCCCTTTCCAGTGCTCTGGAATCTTTCACCAAGGTGGAGAGAATTGGCGATCCAGAAACAAAATTTAAGTGTGAAAACTGCAAAGAGGAGGTGTGGGTGGAGAAGCAGCTTAAGCTGGAAAAAATCCCTTTGGTTACTACATTCCACTTAAAGAGATTCAAGGCTGATAGTTCTTTTGTTGAGAAAATCGAAAAGCACTTGGAGTTTCCATTAGAGTTAGATTTGAAGCCGTACACCCTGGGAGGCAAGGATGCAGAGGTGGAACTCAAATATGAATTGTATGCCATTGTGGAACACACAGGGTTTTCCTCTACTTCTGGGCACTACTTCAGCTTTGTTCGTTCCTCTCCTGATACATGGCACAGAATGGACGACTCATTGGTTACTTCAGTCACTGAAGAGTATGTGCTGTCACGTGAGGCCTACATTTTGTTATATAAGAGGAAGGGGACTTCATGGTTCTCAAGTTTAATTCAACGATCGGATCCTTGCTTGAATTCAGATTCCTCAAATCCATCTCCCAAGTCGGTTTTGCAAAATATCGGTACTGGTTGCTCTTCATTTGCTGCTGAGTCTAAAGTCAATCACGAATCTGCAAATGCACCTGCGGATACTTTGCAACCAAGTCCTGCTCGGTTTTCCTGTGAAATGGAGAATCAAGATACTGGTGTCAGTGATTTGGAAAATGCTACTTCTGCTAACTTGAATATAGTTGAGAGTGCAACAATGAAGTCTTCTCCCATTGTAACTAAGGATCTCTGTTTGAATGATGAAGATGAAAGTATTGATGGTTTTCATCCTCTATCGCCAGTGAGATCTCCCAGCCCCGATAATGTCTTCCGTACTCCAGAACCACAATACCGAATCCCAGTTGATCATCTGAAGACAGAAAAGTGCTCAACATCTGGAAGCCCATTGAATAAGGGTGTGGAAGATTCTGAAAGAAAAGCAGCCATGAGGTACGTTAAGAAGAACATGCCAGGTTCGAGAGGGTCGAAAATGATTGCTGCTATATTGGGATCTCAGAGTGAAGGCTCCTCTTTGAACAAGAAGAAGAGACTAAGGTCATTACCATGTAAAAGGTCAAGCCCGCCTAACACTCGTCGCAAAACAAGTATAGTTCTGTGA 1968 43.6 MATHLVDSQELDPFLVPPLGIEAGSWHSTTTEDALTQQSLLHSSSCRNGNFSFSPMDASANQSWGSSSINPTGSSPFSTYSSDSDGLDALPPLPGSSLEWSTSEEAFPENSVSAQETESLSAGAGLANLGNTCFINAILQCLTHTAPFVEGLRSANHDMPCNSEGFCVFCAIRDHIELSLTSLGGIISPVKLVDNLNYFSSFFWRYQQEDAHEFMQCFLDKLERCMVSEGKDRVSSEDDDLVNKVFGGRLISNLCCCNCGHCSETHEPLVDLSLEIENVDSLSSALESFTKVERIGDPETKFKCENCKEEVWVEKQLKLEKIPLVTTFHLKRFKADSSFVEKIEKHLEFPLELDLKPYTLGGKDAEVELKYELYAIVEHTGFSSTSGHYFSFVRSSPDTWHRMDDSLVTSVTEEYVLSREAYILLYKRKGTSWFSSLIQRSDPCLNSDSSNPSPKSVLQNIGTGCSSFAAESKVNHESANAPADTLQPSPARFSCEMENQDTGVSDLENATSANLNIVESATMKSSPIVTKDLCLNDEDESIDGFHPLSPVRSPSPDNVFRTPEPQYRIPVDHLKTEKCSTSGSPLNKGVEDSERKAAMRYVKKNMPGSRGSKMIAAILGSQSEGSSLNKKKRLRSLPCKRSSPPNTRRKTSIVL* 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1273779 1277143 - CsaV3_3G001680.1 Csa03g00168 521073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00168 655 MobiDBLite consensus disorder prediction 91 114 - -
Csa03g00168 655 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 115 474 - -
Csa03g00168 655 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 125 140 IPR018200 GO:0004843|GO:0006511
Csa03g00168 655 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 371 389 IPR018200 GO:0004843|GO:0006511
Csa03g00168 655 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 124 429 IPR028889 -
Csa03g00168 655 MobiDBLite consensus disorder prediction 545 564 - -
Csa03g00168 655 Gene3D Cysteine proteinases 121 431 - -
Csa03g00168 655 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 115 474 - -
Csa03g00168 655 Pfam Ubiquitin carboxyl-terminal hydrolase 125 426 IPR001394 GO:0004843|GO:0016579
Csa03g00168 655 MobiDBLite consensus disorder prediction 640 655 - -
Csa03g00168 655 SUPERFAMILY Cysteine proteinases 124 428 IPR038765 -
Csa03g00168 655 MobiDBLite consensus disorder prediction 96 114 - -
Csa03g00168 655 MobiDBLite consensus disorder prediction 622 655 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00168 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - csv:101210383 1324.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00539 Csa-Chr2:3788087 Csa03g00168 Csa-Chr3:1273779 3.00E-77 dispersed
Csa03g00168 Csa-Chr3:1273779 Csa04g02602 Csa-Chr4:25492892 6.12E-50 dispersed
Csa04g01318 Csa-Chr4:13521869 Csa03g00168 Csa-Chr3:1273779 1.44E-19 dispersed
Csa06g02478 Csa-Chr6:22051610 Csa03g00168 Csa-Chr3:1273779 1.15E-10 dispersed
Csa03g00168 Csa-Chr3:1273779 Csa03g04488 Csa-Chr3:39098697 4.19E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g673 . . . . . . . Bma14g00154 . Cmo16g01210 . . . . Sed02g0114 Cpe14g00962 . Bhi11g00158 Tan01g2190 Cmetu06g2228 . . Mch10g1656 . Cla10g00157 Cam10g0157 Cec10g0167 Cco10g0166 Clacu10g0159 Cmu10g1008 Cre10g0418 Cone8ag0473 Cone12ag0467 . . Lsi07g01196 . . Cme06g02471 Blo03g00860 . Bda07g00098 . . Bpe11g00335 . . . . . . Cma16g01159 . Car16g01099 . . . . . . . . . . . . . . . . . Csa03g00168 Chy06g02145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003716 1 3 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 1 1 1 4 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00168 Csa_Chr03 FPKM 16.951227 16.461515 7.630706 8.938732 8.670005 6.585213 9.244298 6.226951 6.42205 7.08453