Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00171 ATGGACGCTTTCATGAATTCCGATCTGTCTTCCTACTGGGCTCCGTCAGCCGCCTCCTCTCACTCTCTTCACCACCCACCGCCACCTCAGTCCTCCGCCTCCACATCCACTCCCCCGCCGGACGCACCTAAGTCCCTCCCCGTTTTCAATCAGGAGACTCTGCAGCAGCGGCTCCAGGCGCTGATCGACGGTGCTAGGGAGAGTTGGACTTATGCGATTTTCTGGCAGTCGTCTTATGATTATTCTGGTGGGTCTGTTTTGGGGTGGGGTGATGGGTATTACAAAGGAGAGGAAGATAAAGGAAAGGGAAAAGCGAAAATGGTGTCGTCAGCGGCGGAGCAGGCTCACCGGAAGAAGGTTTTACGGGAGCTTAACTCTTTGATTTCTGGCTCTGCCGCCGGACCTGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGTGTTGGGTTACCGAGTCAAGCGTTTTACCACTCGACGCCGATTTGGGTCTCTGGTGCCGATCGGCTGTCGGCGTCTGCCTGTGAACGAGCTAGACAGGGGAGGGTTTTTGGGTTACAGACGATGGTCTGTATTCCATCGCCTAACGGTGTTGTGGAAATGGGTTCGACGGAATTGATTCATCGAACGTCGGATTTGATGAATAAGGTCAAGATTCTGTTCAATTTCAACAATCTCGAAACGAGTTCTTGGATTTCGGGAACTACCGCCGCCGCATCCGCTGCCGACGAAGGGGAAAACGACCCGTCGTCGATGTGGATCAGTGAGCCATCGAGTACAATCGAGATGAAGGATTCAATCACCACCACTGTTCCTTCCAGCAACGTTCCGGCAAAGCCAATCCGTTCGGAAAATCCCAGTACAAGTAGCTTAACGGAAAATATGAGCACGATTCAACAATCCCATCATAAACAGAGCCAAAGCTTCTTAAATTTCTCCGATTACGGCTTCGAATCAAATCCCACAAAGAACACCACCGCTACCGCCACCGCAACCACCAGCACCACCCCATCATTCAAGCCGGAATCCGGCGGGATGCTGAATTTCGGCAACGGGAGCCTCTTCTCCGGCCATTCACAGTACGTAACAAACGAACAGAACGAGAAAAAGAGATCCCCTGCTTCTCGAAGTAGCAACGACGAAGGGATCCTCTCTTTCACCTCCGGCGTGATCTTACCCTCTTCCGGTAAGGTAAAATCCGGTGATTCAGACCATTCAGATCTCGAAGCATCAGCGATCAGAGAAGTGGATAGCTGTACAAAATCATTAGAACCCGAAAAACGTCCAAGAAAAAGAGGTAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGGCGAGAGAAATTAAACCAGAAATTCTACGCTCTCCGAGCTGTAGTTCCAAACGTATCTAAGATGGACAAAGCCTCACTACTAGGTGACGCGGTTTCGTACATAAACGAGCTCAAATCGAAGCTCCAAATGGCAGAATCGGAGAAAACAGATATGGGAAAACATCTAGAATTGCTGAAGAAGGAGATGGGAGGAAAAGATTTAGGATGTTACTCAAACCCAAATGATGAAGATCTGAAAACAGGGAAAAGAAAGGTAATGGATATGGAGATTGAAGTTAAAATCATGGGTTGGGATGCGATGATAAGGATTCAAAGCAACAAGAAGAATCATCCGGCGGCGAGGTTGATGACGGCGTTTAAGGATTTGGATTTAGAAATGCTTCACGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAAGCAACAGTGAAGATGGGGAGCAGATTTTACACACAAGAGCAGCTTAAAATGGCTCTTGTCGCCCGAGTCGGCGGTGGTGGAAGTGGAGGCGGCGGTGGAATCATGTAA 1929 49.04 MDAFMNSDLSSYWAPSAASSHSLHHPPPPQSSASTSTPPPDAPKSLPVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEEDKGKGKAKMVSSAAEQAHRKKVLRELNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFYHSTPIWVSGADRLSASACERARQGRVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAAASAADEGENDPSSMWISEPSSTIEMKDSITTTVPSSNVPAKPIRSENPSTSSLTENMSTIQQSHHKQSQSFLNFSDYGFESNPTKNTTATATATTSTTPSFKPESGGMLNFGNGSLFSGHSQYVTNEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASAIREVDSCTKSLEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQMAESEKTDMGKHLELLKKEMGGKDLGCYSNPNDEDLKTGKRKVMDMEIEVKIMGWDAMIRIQSNKKNHPAARLMTAFKDLDLEMLHASVSVVNDLMIQQATVKMGSRFYTQEQLKMALVARVGGGGSGGGGGIM* 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1295970 1297898 + CsaV3_3G001710.1 Csa03g00171 521076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00171 642 MobiDBLite consensus disorder prediction 16 47 - -
Csa03g00171 642 Gene3D - 453 530 IPR036638 GO:0046983
Csa03g00171 642 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 523 IPR036638 GO:0046983
Csa03g00171 642 Pfam Helix-loop-helix DNA-binding domain 458 503 IPR011598 GO:0046983
Csa03g00171 642 MobiDBLite consensus disorder prediction 334 355 - -
Csa03g00171 642 MobiDBLite consensus disorder prediction 16 30 - -
Csa03g00171 642 MobiDBLite consensus disorder prediction 334 365 - -
Csa03g00171 642 CDD bHLH_AtAIB_like 451 527 - -
Csa03g00171 642 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
Csa03g00171 642 SMART finulus 460 509 IPR011598 GO:0046983
Csa03g00171 642 MobiDBLite consensus disorder prediction 31 45 - -
Csa03g00171 642 PANTHER TRANSCRIPTION FACTOR MYC2 31 630 - -
Csa03g00171 642 MobiDBLite consensus disorder prediction 413 464 - -
Csa03g00171 642 MobiDBLite consensus disorder prediction 407 464 - -
Csa03g00171 642 PANTHER MYC 31 630 IPR045084 GO:0003700|GO:0006355
Csa03g00171 642 MobiDBLite consensus disorder prediction 283 303 - -
Csa03g00171 642 MobiDBLite consensus disorder prediction 376 395 - -
Csa03g00171 642 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 54 234 IPR025610 -
Csa03g00171 642 Coils Coil 507 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00171 Csa-Chr3:1295970 Csa06g02322 Csa-Chr6:20849605 6.47E-08 dispersed
Csa01g02800 Csa-Chr1:24662874 Csa03g00171 Csa-Chr3:1295970 3.62E-08 transposed
Csa02g00399 Csa-Chr2:2751170 Csa03g00171 Csa-Chr3:1295970 1.06E-12 transposed
Csa02g00796 Csa-Chr2:6877325 Csa03g00171 Csa-Chr3:1295970 3.10E-35 transposed
Csa02g02175 Csa-Chr2:19575197 Csa03g00171 Csa-Chr3:1295970 4.61E-14 transposed
Csa03g00709 Csa-Chr3:6381666 Csa03g00171 Csa-Chr3:1295970 1.22E-12 transposed
Csa03g00798 Csa-Chr3:6919411 Csa03g00171 Csa-Chr3:1295970 4.32E-26 transposed
Csa03g01101 Csa-Chr3:8707121 Csa03g00171 Csa-Chr3:1295970 6.38E-17 transposed
Csa03g01369 Csa-Chr3:10293079 Csa03g00171 Csa-Chr3:1295970 7.43E-11 transposed
Csa03g02242 Csa-Chr3:19737551 Csa03g00171 Csa-Chr3:1295970 1.27E-12 transposed
Csa06g00053 Csa-Chr6:351129 Csa03g00171 Csa-Chr3:1295970 2.77E-22 transposed
Csa06g00894 Csa-Chr6:7177946 Csa03g00171 Csa-Chr3:1295970 3.40E-24 transposed
Csa07g00647 Csa-Chr7:4647975 Csa03g00171 Csa-Chr3:1295970 1.02E-18 transposed
Csa03g00171 Csa-Chr3:1295970 Csa03g04609 Csa-Chr3:40071324 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31079 PF14215 bHLH-MYC_N 7.60E-53 CL0161 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00171 K13422 - csv:101205372 1154.04