Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00180 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACATCATCAACAATCAACTCCACCCAACAGGATGATCCCCAACAACGCTTCTTATTCCGCTAATATGCCCAATTCCAACAATACTTCCCCTTTGATCAACCCCAATTCCGCTGCTGCTCAAATGATGTCTTCCGCTTCCCGATTTCCCTTCAACTCCATGATGGGTTCCTCTTCTAAGCCTTCCGAATCTCCCAATGCAGCTTCTTATGATGGATCGCAGTCTGAATTGCGCACTGGTGGCTTTAACATTGATTCTGGGAAGAAGAAGAGAGGCCGTCCCAGGAAGTATTCTCCTGATGGGAATATCGCCTTGGGTTTATCACCAACCCCCATCACTTCTTCCGCCGTTCCTGCCGATTCCGCCGGCATGCACTCCCCAGATCCTCGCCCTAAGAAGAACAGGGGACGGCCGCCCGGTACAGGGAAGAGGCAAATGGATGCTTTGGGGACCGGCGGTGTTGGTTTTACTCCTCATGTCATTCTTGTGAAACCAGGAGAGGACATTGCCTCAAAAGTTATGGCATTTTCACAGCAGGGGCCACGGACTGTTTGTATTCTCTCTGCCCATGGGGCTGTCTGCAACGTTACCCTTCAACCTGCATTGTCATCTGGTAGTGTGTCATACGAGGGCCGCTATGAAATCATATCTCTATCAGGTTCCTTTTTGATTTCTGAAAATAATGGTAATCGGAGTCGAAGTGGTGGTTTAAGTGTGTCTCTAGCAAGTGCAGATGGACAAGTTCTTGGTGGAATTACCAACATGCTAACGGCAGCATCGACAGTTCAGGTTATAGTCGGTAGCTTTCTCGTGGATGGAAAAAAGCTAGGAGCAAGTATACAGAAATCTGGGCCGTCGTCTACGTCCCCCAATATGTTAAACTTTGGTACACCCGTGGCTGCAGGCTGCCCCTCTGAAGGTGCATCAAATAATTCATCCGACGACAATGGTGGTAGCCCTTTAAGCCGAGGGCCTGGAATGTACACCAATGCGAACCAACCAATTCATAATATGCAGATGTATCAACAATTATGGGCTAGCCGAAATCAATAA 1089 48.48 MDSRERSMPSVHQHHQQSTPPNRMIPNNASYSANMPNSNNTSPLINPNSAAAQMMSSASRFPFNSMMGSSSKPSESPNAASYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPITSSAVPADSAGMHSPDPRPKKNRGRPPGTGKRQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQQGPRTVCILSAHGAVCNVTLQPALSSGSVSYEGRYEIISLSGSFLISENNGNRSRSGGLSVSLASADGQVLGGITNMLTAASTVQVIVGSFLVDGKKLGASIQKSGPSSTSPNMLNFGTPVAAGCPSEGASNNSSDDNGGSPLSRGPGMYTNANQPIHNMQMYQQLWASRNQ* 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1332208 1341802 + CsaV3_3G001800.1 Csa03g00180 521085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00180 362 Gene3D - 170 295 - -
Csa03g00180 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 82 355 IPR039605 GO:0003680
Csa03g00180 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 281 IPR005175 -
Csa03g00180 362 MobiDBLite consensus disorder prediction 292 307 - -
Csa03g00180 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 82 355 - -
Csa03g00180 362 ProSiteProfiles PPC domain profile profile. 164 303 IPR005175 -
Csa03g00180 362 MobiDBLite consensus disorder prediction 12 93 - -
Csa03g00180 362 MobiDBLite consensus disorder prediction 316 345 - -
Csa03g00180 362 CDD DUF296 169 281 IPR005175 -
Csa03g00180 362 SMART AT_hook_2 100 112 IPR017956 GO:0003677
Csa03g00180 362 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Csa03g00180 362 MobiDBLite consensus disorder prediction 292 345 - -
Csa03g00180 362 MobiDBLite consensus disorder prediction 1 162 - -
Csa03g00180 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00180 Csa-Chr3:1332208 Csa06g00046 Csa-Chr6:313734 5.12E-56 dispersed
Csa06g01266 Csa-Chr6:10628733 Csa03g00180 Csa-Chr3:1332208 1.94E-24 dispersed
Csa04g02738 Csa-Chr4:26296064 Csa03g00180 Csa-Chr3:1332208 5.50E-70 transposed
Csa06g02206 Csa-Chr6:19888856 Csa03g00180 Csa-Chr3:1332208 2.46E-72 transposed
Csa03g00180 Csa-Chr3:1332208 Csa03g04617 Csa-Chr3:40112092 2.28E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00180 - - csv:101204243 677.167