Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00181 ATGGCTGGGTTGGATTTAGGAACTCGATATCTAACTCACCTTCAACCACAAGTAGACGGTGGTCATTTCTCCTCCGGTGATCACCAAGACGATGACGATCCCCACCAAACCCTAGGTGGTACGGGGGATGTTGTTGGCCGTCGTCCACGCGGTCGGCCACCAGGTTCGAAAAACAAACCAAAGCCGCCGGTTATCATCACCCGTGAGAGCGCCAACACGCTTCGTGTCCACATCTTAGAAGTTGGCAGCGGCTGCGATGTTTTCGATTGCGTCGCTTCCTACGCCCGCCGACGACAGCGTGGGATCTGTATTTTGAGCGGTAGCGGTAACGTCACCAACGTCGGTCTCCGCCAGCCAGCGGCAGCTGGGGTGTTGACTCTTCAAGGGAGGTTTGAAATTTTGTCGTTGTCGGGATCGTTTCTGCCGCCGCCTGCTCCACCCGGTGCGACGAGTTTGACGATATTTTTAGCCGGAGGGCAGGGGCAAGTAGTGGGAGGGACGGTTGCTGGTGAATTGACAGCGGCCGGGCCGGTGATTTTGATTGCAGCTTCGTTTACGAATGTAGCGTATGAGAGATTGCCATTGGATGAGGAGGATCAGCAACAAACTCCTGCAGGCGGCGGAGGGAGCGGCGGCGGAGTTGGTAACAACAACAATAATAATCCATTTCAAGACCCATCAAATTCAGGACTTCCATTCTTGAATTTGCCACTTCATATGCAAAATGTTCAACTTCCACCCTTTTGA 747 53.55 MAGLDLGTRYLTHLQPQVDGGHFSSGDHQDDDDPHQTLGGTGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDVFDCVASYARRRQRGICILSGSGNVTNVGLRQPAAAGVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQTPAGGGGSGGGVGNNNNNNPFQDPSNSGLPFLNLPLHMQNVQLPPF* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1347507 1349433 - CsaV3_3G001810.1 Csa03g00181 521086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00181 248 PIRSF ESCAROLA 9 244 IPR014476 GO:0003680
Csa03g00181 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 247 IPR014476 GO:0003680
Csa03g00181 248 MobiDBLite consensus disorder prediction 199 231 - -
Csa03g00181 248 ProSiteProfiles PPC domain profile profile. 71 207 IPR005175 -
Csa03g00181 248 Gene3D - 74 203 - -
Csa03g00181 248 MobiDBLite consensus disorder prediction 203 231 - -
Csa03g00181 248 CDD DUF296 75 185 IPR005175 -
Csa03g00181 248 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 32 247 - -
Csa03g00181 248 MobiDBLite consensus disorder prediction 17 65 - -
Csa03g00181 248 Pfam Plants and Prokaryotes Conserved (PCC) domain 75 187 IPR005175 -
Csa03g00181 248 SUPERFAMILY AF0104/ALDC/Ptd012-like 71 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00181 Csa-Chr3:1347507 Csa06g00649 Csa-Chr6:5397986 9.96E-94 dispersed
Csa03g00181 Csa-Chr3:1347507 Csa03g04619 Csa-Chr3:40121090 1.23E-96 wgd
Csa03g00181 Csa-Chr3:1347507 Csa03g01009 Csa-Chr3:8151266 3.18E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00181 - - csv:101210132 432.565