Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00186 ATGGAAGAAAGTACAAGGGTGTTTGCTAAAAGCGCCAAGGATCAAAAAGAAAAACTAAATGTGTATGTCTGGGACATGGATGAGACCATCATCCTGCTCAAGTCTTTGTTGGATGGGACATATGCTAAGGCTTTTGGTGGTTCAAAGGATGTTAAAAGGGGTGAAGAACTTGGCAAAATGTGGGAGAAGGAGATTCTCGATCTGTGTGATCATTTCTTCTTCTATGAACAAATAGAAAACTATAACCAACCCTTTCTTGATGCATTGAATGAATACGACGATGGTCGCGATCTTTCTAATTATGATTTTGATCAAGATGGTTTTGGTCCACCATGTGATGATGCAAACAAAAGAAAATTGGCTTTTAGGCAACGCGCAATAACCAATAAGTACAAAGAGGGCCTGCAGAATATCTTTGATCAACAGAAGATGAAACGCTGGGAAGAGTTATATGAAATGACTGATGTCTATACAGATAGATGGTTCTCCTCAGCACGAGCTTTCTTGGAGGAGTGTTCAATTTCAGATGAACCACCACTTGTGTCTGCTGATCAGACATCCAACAGTACTTCTACAAGTTCTCAGCATGTTAATATCTTGGTGACATCTGGAGCCTTGATACCCAGCCTTGTGAAATGTTTACTATTTCGGCTCGATCATCTAATAACACCTGGAAATGTCTACAGTTCGTGGGAAGTGGAAAAAGTGCAATGTTTCCAGTGGATCAAGGAGCGTTTTGACAAGCCAAATGTTCGTTTCTGTGCAATAGGCAATGGATGGGAAGAGTGTGAAGCTGCACAGTCCTTGAAATGGCCATTTGTTAAGATTGATCTGCAACCTGGAAGTCTTCACAGGTTCCCTGGTCTGTCTTTGAAAACAATAGGCTTTTACTTCTCTGTTATTTATGGTCCTACTGCTTACATTATGCATAACCCGCCTCCACTAATCTTTAGTGAGGCTTCACCCACCTCAAGATATGCCTTCAAGTCATTGTTCATTGTTCTTTCACTAAGCAGTTCTTCCAAATCCAGATATGGTAGGAACGAAGACAAAGCACGGTGTTGTCTTTGCCTGAGAAACCGAGTGTTGAAGAAATTCACCTGGAAAAGAAGTTTCTTCAACATCACAAAAATGCCGTTTCCACCAGTTACTTGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGCTTAACGATGGCTCGGCTGGTGTGTAGTGGCTGCTACACCCTGCTCATGTACAGTCGTGGGGCGAAAAGTGTACAATGTTCTTGTTGTCGCACCATAAATGCAGCTTCTGAAGCAAATCAGATGGCTCACATCAACTGTGGGAACTGTAGAGTGCTGCTGATGTACCAATGTGAAGCACATTCTGTTAAATGTACACTTTGCAATTTTGTCACCTCAGTTGGGATTTTGAGGTTTAATTAG 1509 41.82 MEESTRVFAKSAKDQKEKLNVYVWDMDETIILLKSLLDGTYAKAFGGSKDVKRGEELGKMWEKEILDLCDHFFFYEQIENYNQPFLDALNEYDDGRDLSNYDFDQDGFGPPCDDANKRKLAFRQRAITNKYKEGLQNIFDQQKMKRWEELYEMTDVYTDRWFSSARAFLEECSISDEPPLVSADQTSNSTSTSSQHVNILVTSGALIPSLVKCLLFRLDHLITPGNVYSSWEVEKVQCFQWIKERFDKPNVRFCAIGNGWEECEAAQSLKWPFVKIDLQPGSLHRFPGLSLKTIGFYFSVIYGPTAYIMHNPPPLIFSEASPTSRYAFKSLFIVLSLSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGAKSVQCSCCRTINAASEANQMAHINCGNCRVLLMYQCEAHSVKCTLCNFVTSVGILRFN* 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1389841 1396283 - CsaV3_3G001860.1 Csa03g00186 521091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00186 502 PANTHER DEVELOPMENTAL PROTEIN EYES ABSENT 6 303 - -
Csa03g00186 502 PANTHER EYES ABSENT 6 303 IPR028472 GO:0004725
Csa03g00186 502 Pfam LSD1 zinc finger 469 493 IPR005735 -
Csa03g00186 502 Pfam LSD1 zinc finger 431 455 IPR005735 -
Csa03g00186 502 Pfam LSD1 zinc finger 392 416 IPR005735 -
Csa03g00186 502 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 389 418 IPR005735 -
Csa03g00186 502 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 429 456 IPR005735 -
Csa03g00186 502 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 466 496 IPR005735 -
Csa03g00186 502 Gene3D - 20 286 IPR038102 -
Csa03g00186 502 TIGRFAM EYA-cons_domain: EYA conserved domain 19 294 IPR006545 GO:0007275
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00186 Csa-Chr3:1389841 Csa06g03884 Csa-Chr6:30703030 7.24E-09 dispersed
Csa03g00186 Csa-Chr3:1389841 Csa03g04626 Csa-Chr3:40182443 9.49E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31081 PF06943 zf-LSD1 1.40E-09 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00186 - - csv:101203755 619.772