Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00186 ATGGAAGAAAGTACAAGGGTGTTTGCTAAAAGCGCCAAGGATCAAAAAGAAAAACTAAATGTGTATGTCTGGGACATGGATGAGACCATCATCCTGCTCAAGTCTTTGTTGGATGGGACATATGCTAAGGCTTTTGGTGGTTCAAAGGATGTTAAAAGGGGTGAAGAACTTGGCAAAATGTGGGAGAAGGAGATTCTCGATCTGTGTGATCATTTCTTCTTCTATGAACAAATAGAAAACTATAACCAACCCTTTCTTGATGCATTGAATGAATACGACGATGGTCGCGATCTTTCTAATTATGATTTTGATCAAGATGGTTTTGGTCCACCATGTGATGATGCAAACAAAAGAAAATTGGCTTTTAGGCAACGCGCAATAACCAATAAGTACAAAGAGGGCCTGCAGAATATCTTTGATCAACAGAAGATGAAACGCTGGGAAGAGTTATATGAAATGACTGATGTCTATACAGATAGATGGTTCTCCTCAGCACGAGCTTTCTTGGAGGAGTGTTCAATTTCAGATGAACCACCACTTGTGTCTGCTGATCAGACATCCAACAGTACTTCTACAAGTTCTCAGCATGTTAATATCTTGGTGACATCTGGAGCCTTGATACCCAGCCTTGTGAAATGTTTACTATTTCGGCTCGATCATCTAATAACACCTGGAAATGTCTACAGTTCGTGGGAAGTGGAAAAAGTGCAATGTTTCCAGTGGATCAAGGAGCGTTTTGACAAGCCAAATGTTCGTTTCTGTGCAATAGGCAATGGATGGGAAGAGTGTGAAGCTGCACAGTCCTTGAAATGGCCATTTGTTAAGATTGATCTGCAACCTGGAAGTCTTCACAGGTTCCCTGGTCTGTCTTTGAAAACAATAGGCTTTTACTTCTCTGTTATTTATGGTCCTACTGCTTACATTATGCATAACCCGCCTCCACTAATCTTTAGTGAGGCTTCACCCACCTCAAGATATGCCTTCAAGTCATTGTTCATTGTTCTTTCACTAAGCAGTTCTTCCAAATCCAGATATGGTAGGAACGAAGACAAAGCACGGTGTTGTCTTTGCCTGAGAAACCGAGTGTTGAAGAAATTCACCTGGAAAAGAAGTTTCTTCAACATCACAAAAATGCCGTTTCCACCAGTTACTTGTTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGCTTAACGATGGCTCGGCTGGTGTGTAGTGGCTGCTACACCCTGCTCATGTACAGTCGTGGGGCGAAAAGTGTACAATGTTCTTGTTGTCGCACCATAAATGCAGCTTCTGAAGCAAATCAGATGGCTCACATCAACTGTGGGAACTGTAGAGTGCTGCTGATGTACCAATGTGAAGCACATTCTGTTAAATGTACACTTTGCAATTTTGTCACCTCAGTTGGGATTTTGAGGTTTAATTAG 1509 41.82 MEESTRVFAKSAKDQKEKLNVYVWDMDETIILLKSLLDGTYAKAFGGSKDVKRGEELGKMWEKEILDLCDHFFFYEQIENYNQPFLDALNEYDDGRDLSNYDFDQDGFGPPCDDANKRKLAFRQRAITNKYKEGLQNIFDQQKMKRWEELYEMTDVYTDRWFSSARAFLEECSISDEPPLVSADQTSNSTSTSSQHVNILVTSGALIPSLVKCLLFRLDHLITPGNVYSSWEVEKVQCFQWIKERFDKPNVRFCAIGNGWEECEAAQSLKWPFVKIDLQPGSLHRFPGLSLKTIGFYFSVIYGPTAYIMHNPPPLIFSEASPTSRYAFKSLFIVLSLSSSSKSRYGRNEDKARCCLCLRNRVLKKFTWKRSFFNITKMPFPPVTCCQNQIMCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLTMARLVCSGCYTLLMYSRGAKSVQCSCCRTINAASEANQMAHINCGNCRVLLMYQCEAHSVKCTLCNFVTSVGILRFN* 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1389841 1396283 - CsaV3_3G001860.1 Csa03g00186 521091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00186 502 PANTHER DEVELOPMENTAL PROTEIN EYES ABSENT 6 303 - -
Csa03g00186 502 PANTHER EYES ABSENT 6 303 IPR028472 GO:0004725
Csa03g00186 502 Pfam LSD1 zinc finger 469 493 IPR005735 -
Csa03g00186 502 Pfam LSD1 zinc finger 431 455 IPR005735 -
Csa03g00186 502 Pfam LSD1 zinc finger 392 416 IPR005735 -
Csa03g00186 502 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 389 418 IPR005735 -
Csa03g00186 502 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 429 456 IPR005735 -
Csa03g00186 502 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 466 496 IPR005735 -
Csa03g00186 502 Gene3D - 20 286 IPR038102 -
Csa03g00186 502 TIGRFAM EYA-cons_domain: EYA conserved domain 19 294 IPR006545 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00186 - - - csv:101203755 619.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00186 Csa-Chr3:1389841 Csa06g03884 Csa-Chr6:30703030 7.24E-09 dispersed
Csa03g00186 Csa-Chr3:1389841 Csa03g04626 Csa-Chr3:40182443 9.49E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g646 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00186 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa07g01336 . 65 374 Protein tyrosine phosphatase (PTP) family AT1G71860 66.0 1.6e-117 419.5
Csa01g00011 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.4 0.0e+00 1085.1
Csa06g01564 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.7 1.4e-40 162.9
Csa06g02399 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.3 5.1e-70 260.8
Csa05g02758 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.2e-113 406.4
Csa05g00878 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 3.2e-111 398.3
Csa03g03940 . 151 599 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Csa06g01343 . 15 215 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 8.4e-74 273.9
Csa06g02393 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 6.2e-69 257.7
Csa01g03339 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.5e-54 209.9
Csa03g00252 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 7.3e-102 367.5
Csa02g00073 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 4.6e-80 295.0
Csa03g00252 . 38 213 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Csa06g01343 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 5.7e-78 287.3
Csa06g02393 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Csa01g03339 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.9e-57 219.2
Csa01g03339 . 3 201 Protein tyrosine phosphatase (PTP) family AT3G02800 69.7 2.8e-80 295.0
Csa06g01343 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 3.1e-55 211.8
Csa06g02393 . 37 228 Protein tyrosine phosphatase (PTP) family AT3G02800 50.5 8.7e-50 193.7
Csa05g00673 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.6 1.0e-61 235.3
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa07g00734 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Csa06g02964 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 62.6 9.9e-198 686.8
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa06g01286 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 57.6 8.9e-71 263.8
Csa03g00186 . 19 303 Protein tyrosine phosphatase (PTP) family AT2G35320 64.9 1.5e-109 392.9
Csa04g01589 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.5 3.4e-276 947.6
Csa04g01589 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 1.3e-251 865.9
Csa04g01589 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.3 1.8e-183 639.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011188 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31081 PF06943 zf-LSD1 1.40E-09 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00186 Csa_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Csa03g00186 Csa_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Csa03g00186 Csa_Chr03 FPKM 0.0 0.0 0.0 0.0 0.371882 0.154544 0.357614 0.195105 0.082673 0.174205