Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00189 ATGGGAAGCGGAGTCTCCAGCCTCTTCTCGTGCCTCAAGCCGGAGACTCGCCCCGCCGCCCTTCCCGCCGACAATTCCGACATCCTCTTCTCCGCCTCCGACCCACTTGACGAAACCCTAGGCCATTCCTTTTGTTACGTCCGTTCTTCTAACCGTTTCCTTTCTCCTTCTCATTCCGATCGCTTTCTTTCCCCTTCTCAGTCCCTTCGTTTTTCCCCTCCTCACGACCCTTCTTCACTTCCTACTACTACTACTCGGACTAGAACTGGCCCCCCTGAGACTGCTTTCAAAGCCATCTCTGGTGCTTCTGTCAGTGCTAATAGTTCTATTCCCAGATCTGTTCTTATGCTTGATGCTGTTTATGACGATGCCACTGACACTGCTCTTGGTGCTTCTGCTGGTGGTTGTGGTGTTAGAGGGAGTATTTTGAATGGTTTTGAGAGTACTTCTTCTTTTACTGCTCTCCCACTTCAGCCTGTTCCTAGAGGTGGGACTGAACCTTTGGAACGAGGTGGGTTTTTTCTCTCTGGTCCAATTGAGCGTGGGGCGTTGTCTGGTCCACTTGATGCTAATGTCGATGCTGCTGCTGCTGCTGCTGCTGCCGGTGGTGGTAGTGGTGGCGGGAGAGTTCATTTCTCTGCTCCACTTGGTGGGATGTACGTGAAGAAGAAGAGGAAGAAGGGCATTTCGGGGTTTAGGAAGGCGTTTACGAGGAATTTTTCGGATAAGCGTCCGTGGGTGGTGCCGGTGTTGAATTTTGTTGGTCGGAAGGAGAGTTCGACGGCGGGAGATGAGCCGGAGGTGAGGAATGAGAGTGATGTTCAATGGGCGCTTGGGAAGGCTGGAGAGGATCGGGTACATGTGGTTGTATCGGAAGAGCAAGGGTGGTTGTTCGTTGGGATTTATGATGGCTTCAATGGCCCCGATGCGCCGGAATTCTTGATGGGTAATCTTTACAGAGCTGTATTCAATGAGCTTCAGGGATTGTTTTGGGAAATTGACGATAATGAGGAGGCTGCTGCTAATTCCAACCCTCCGAATGTGGCGGGAGAGAGCACGGTCGGCGTGCGTGTCAATGAAACTAATGCCGACCCATCCTCGAGACCCTCTAGTCAAACCATTCAAACTAATGGGAATATTTCAGTAGTTGGAAATGAAGTGGAAGTGGAACAACCGGCTGCTGATCGAGGATCGGCTAAGCGGGTTACGTTTCAATCCGAGGATGTACCGGAGAACAGGCGGAGGCGGCGCCTGTGGGAGTATTTAGCGGAGGACGATACACAGGACGGACTTGATCTTTCAGGTTCAGATAGATTTGCATTTTCTGTTGATGACGCGCTTAGTGTAAATAGTGCAGGTTCAGTAGCTGGTAGAAGGTGGTTGTTATTGTCCAAGTTAAGACAAGGGTTGTCAAAGCATAAGGAGGGTCATGTTAAGACTTTGTTCCCATGGAAGTATGGTTTAGGAGATAAAGAGAAGGCTGATGAGACTGAGAATAGGGTGGAGGAGACATCATATCGAAGTGGAAAGAGGAGAAAGGAAGGTTTAATTGATCATGAGTTGGTGTTGGGGGCATTGTCACGGGCTCTTGAGATAACTGAATTAGCATATTTGGACATGACAGATAAGTTGCTTGATACGAATCCAGAGCTTGCTTTGATGGGTTCTTGCTTGCTGGTTGTGTTAATGAGGGATGAAGATGTGTATGTAATGAATTTGGGTGACAGCCGTGCCATTGTTGCACAGTATGAGCAACAAGAAATTGGCCCTAGTGAAGACATGAAGGAGGAGGGCCACAAAAGAACGGGCATGGAGGGTATAATTGAGGAGTCTACAACGAGTGAAGGGAAGATAACTCCAACGAACCAACCTTCGGCTCAGACAACAAGATTGACTGCATTGCAGCTATCCACCGATCATAGTACGAGCATTGAAGAAGAAGTAAGAAGAATAAAGAATGAGCACCCTGATGACAAACAGTGCATTGTCAACGATAGAGTGAAGGGCCGTCTAAAGGTTACAAGGGCATTTGGTGCCGGATTTTTGAAACAGCCAAAGCTGAATGATGCATTACTGGAAATGTTTCGGAATGAGTATATTGGTACTGCACCATATTTATCATGCTTGCCATCACTTCGTCACCATAGACTCTGCCCTACGGATCAGTTCATAGTGCTCTCATCTGATGGATTGTATCAATATCTAACCAATCAAGAAGTGGTTTCTTATGTTGAGAACTTTATGGAGAAGTTTCCAGATGGAGACCCTGCACAGCACTTGATAGAGGAGCTTCTTTGCCGTGCAGCTAGAAAAGCAGGAATGGATTTTCATGAATTGTTGGACATCCCACAGGGGGATCGAAGAAAGTATCATGATGATGTTACTGTTATGGTGATTTCACTTGAAGGAAGAATCTGGAAATCCTCAGGAAAATATCTTTGA 2442 47.5 MGSGVSSLFSCLKPETRPAALPADNSDILFSASDPLDETLGHSFCYVRSSNRFLSPSHSDRFLSPSQSLRFSPPHDPSSLPTTTTRTRTGPPETAFKAISGASVSANSSIPRSVLMLDAVYDDATDTALGASAGGCGVRGSILNGFESTSSFTALPLQPVPRGGTEPLERGGFFLSGPIERGALSGPLDANVDAAAAAAAAGGGSGGGRVHFSAPLGGMYVKKKRKKGISGFRKAFTRNFSDKRPWVVPVLNFVGRKESSTAGDEPEVRNESDVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRAVFNELQGLFWEIDDNEEAAANSNPPNVAGESTVGVRVNETNADPSSRPSSQTIQTNGNISVVGNEVEVEQPAADRGSAKRVTFQSEDVPENRRRRRLWEYLAEDDTQDGLDLSGSDRFAFSVDDALSVNSAGSVAGRRWLLLSKLRQGLSKHKEGHVKTLFPWKYGLGDKEKADETENRVEETSYRSGKRRKEGLIDHELVLGALSRALEITELAYLDMTDKLLDTNPELALMGSCLLVVLMRDEDVYVMNLGDSRAIVAQYEQQEIGPSEDMKEEGHKRTGMEGIIEESTTSEGKITPTNQPSAQTTRLTALQLSTDHSTSIEEEVRRIKNEHPDDKQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDALLEMFRNEYIGTAPYLSCLPSLRHHRLCPTDQFIVLSSDGLYQYLTNQEVVSYVENFMEKFPDGDPAQHLIEELLCRAARKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL* 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1405926 1415531 - CsaV3_3G001890.1 Csa03g00189 521094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00189 813 CDD PP2Cc 513 801 IPR001932 -
Csa03g00189 813 Pfam Protein phosphatase 2C 634 766 IPR001932 -
Csa03g00189 813 MobiDBLite consensus disorder prediction 64 91 - -
Csa03g00189 813 MobiDBLite consensus disorder prediction 64 93 - -
Csa03g00189 813 Gene3D - 253 808 IPR036457 -
Csa03g00189 813 PANTHER PROTEIN PHOSPHATASE 2C 22 811 IPR015655 GO:0004722|GO:0006470
Csa03g00189 813 ProSiteProfiles PPM-type phosphatase domain profile. 267 801 IPR001932 -
Csa03g00189 813 PANTHER PROTEIN PHOSPHATASE 2C 29 22 811 - -
Csa03g00189 813 SUPERFAMILY PP2C-like 279 802 IPR036457 -
Csa03g00189 813 SMART PP2C_4 267 799 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00189 Csa-Chr3:1405926 Csa04g01492 Csa-Chr4:14662814 8.32E-39 dispersed
Csa03g00189 Csa-Chr3:1405926 Csa06g01491 Csa-Chr6:12600999 1.34E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00189 - - csv:101202795 1586.24