Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00209 ATGGTGGAATCGGTTGAGTTACCGAGTCGACTCGGGATTCTTCCTTTCAGAAACAAGGTCCTTTTACCTGGCGCCATTATTCGGATTCGATGCACTTCATCCAGCAGTGTGAAGTTGGTGGAGCAAGAGTTGTGGCAGCGAGAAGAGAAGGGATTAATTGGTATTCTTCCAGTTCGAGATGATGCTGATGCACCGGCAATTGTCCCTGTGTTATCTCAAGGTGTGGGAAGTGATTCTGGAGATCGTAGCTCAAGGGTTCAATCTGGAACCTCTGACTCACAAAGAGTAGATGGGAAAAATCATCAGGAAGTTATTCAATGGCATTCAAGGGGTGTTGCTGCTCGTGCCTTGCAGCTGTCTAGAGGAGTGGAGAAACCGAGTGGAAGGGTGACATATACCGTTGTGCTAGAAGGTTTATGTAGATTTACTGTTCAGGAACTTAGCACCAGAGGAACATATTATACTGCACGAATATCACCTTCAGAAATGACAAAGGCAGAGATGGAGCAAGTGGAGCAAGATCCAGACTTTATTTCATTATCTCGACAATTCAAAGCTACTGCAATGGAGCTTATATCCGTTCTTGAACAGAAACAAAAAACTGGAGGGCGGACAAAAGTTCTTTTGGAGACGGTTCCAGTTCATAAACTGGCTGATATATTTGTTGCCAGTTTTGAGATGAGTTTTGAAGAGCAACTATCTATGCTGGATTCAGTTGATTTAAGAGTAAGGCTTTCAAAAGCAATGGAGTTAGTTGACAGGCATTTACAGTCGATACGTGTAGCAGAGAAGATTACGCAGAAAGTAGAAGGACAGTTATCAAAATCACAGAAAGAATTCCTTTTGCGTCAGCAGATGAGGGCCATAAAGGAGGAGCTTGGTGATGACGACGATGAAGATGATTTGGTTGCCCTAGAAAGAAAGATGCAAAGTGCTGAAATGCCTGCTAATATCTGGAAGCATGCCCAGAGGGAGTTGAGGAGCCTTAAAAAAATGCAACCTCAACAACCTGGGTATAACAGCTTGCGAGTTTACCTTGAGCTTCTTGCTGACCTTCCATGGAAGAAGGCTACTGAAGAAAATGAATTAGACTTGAAAGCCGCAAAGGAACGTCTTGACAGTGACCATTATGGTTTGGTCAAGGTCAAGCAACGAATTATAGAATATCTTGCTGTTCGGAAGCTTAAGCCAGATGCAAGAGGACCTGTGCTGTGCTTTGTAGGGCCACCAGGTGTGGGAAAGACATCTTTGGCATCATCTATTGCTGCTGCTCTGGGCAGAAAGTTTGTACGTATATCCCTGGGTGGTGTTAAAGATGAGGCTGATATTAGAGGACATAGGAGGACCTACATTGGAAGCATGCCAGGGCGTCTTATTGATGGACTAAAGAGAGTATCTGTTTGCAACCCAGTCATGCTATTAGATGAGATTGACAAGACAGGTTCCGATGTGCGAGGCGATCCAGCTTCAGCTCTACTGGAGGTTCTTGACCCTGAACAGAACAAAAAGTTCAGTGATCATTATTTGAATGTCCCATTTGACCTTTCAAAGGTCGTCTTTGTGGCCACTGCTAACAGAATGCAGCCCATACCTCCTCCTCTTCTAGATAGGATGGAAGTCATTGAGCTGCCCGGATACACACCAGAGGAAAAACTTAAGATTGCAATGCACCATTTGATTCCACGAGTTTTGGAACAGCATGGGCTAAGTGCTGAATTTCTTCAAATTCCAGAGGCTATGGTTAAACTTGTGGTTCAAAGATACACTAGAGAGGCTGGTGTACGAAATCTTGAGAGGAATTTGGCTGCGTTGGCTCGTGCTGCTGCTGTTAGAGTTGTGGAAAGAGATCAAACTGTCCCATTGAATAAAGATGTGCATCAGGTTTCCTCTCCTCTGTTGGAAAACAGACTTTCTGATGGAGCTGAAGTAGATATGGAGGTCATCCCAATTGGAGCGGATCATGAGATACCGAACCAATTAAGGATAGCCTCTCCGTTGGTTGTCGACGAGGCTATGCTTGAAAAAGTGCTTGGGCCTCCTAGGTTTGATGATAGAGAGGCAGCCGAGCGGGTTATATCACCTGGGATATCTGTTGGATTGGTTTGGACTGCCGTTGGGGGAGAGGTTCAGTTTGTGGAAGCCACAGCAATGTCCGGGAAGGGGGAATTGCATCTCACCGGCCAGCTTGGTGATGTCATTAAAGAATCAGCTCAGATAGCCCTTACCTGGGTCCGAGCAAGGGCAACAGATCTGAAACTTGCATCAGCTTGTGAATCTAATCTTTTGGAGGGTCGTGATATTCATATACATTTTCCTGCTGGTGCGGTGCCTAAGGATGGGCCTTCAGCTGGTGTGACTCTTGTAACTGCCCTCGTCTCTTTGTTTGGTCAGAAGAGGGTTAGGGCCGATACTGCAATGACAGGAGAAATGACTCTGAGGGGTCTTGTTCTACCCGTTGGTGGCATCAAGGACAAGATATTAGCTGCACATCGTTATGGGATAAAGAGAGTTATTCTGCCAGAGAGAAATTTGAAAGATTTAGTGGAAGTTCCTTCGGGCGTGCTTGCTAGTTTGGAGATATTACTAGCGAAGCGGATGGAAGATGTACTGGAGCAGGCTTTTGAAGGTGGATGTCCATGGAGACTACACTCCAAGTTATGA 2661 45.4 MVESVELPSRLGILPFRNKVLLPGAIIRIRCTSSSSVKLVEQELWQREEKGLIGILPVRDDADAPAIVPVLSQGVGSDSGDRSSRVQSGTSDSQRVDGKNHQEVIQWHSRGVAARALQLSRGVEKPSGRVTYTVVLEGLCRFTVQELSTRGTYYTARISPSEMTKAEMEQVEQDPDFISLSRQFKATAMELISVLEQKQKTGGRTKVLLETVPVHKLADIFVASFEMSFEEQLSMLDSVDLRVRLSKAMELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDEDDLVALERKMQSAEMPANIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWKKATEENELDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVSVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFSDHYLNVPFDLSKVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMHHLIPRVLEQHGLSAEFLQIPEAMVKLVVQRYTREAGVRNLERNLAALARAAAVRVVERDQTVPLNKDVHQVSSPLLENRLSDGAEVDMEVIPIGADHEIPNQLRIASPLVVDEAMLEKVLGPPRFDDREAAERVISPGISVGLVWTAVGGEVQFVEATAMSGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLASACESNLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFGQKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPSGVLASLEILLAKRMEDVLEQAFEGGCPWRLHSKL* 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1649875 1661410 - CsaV3_3G002090.1 Csa03g00209 521114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00209 886 SMART AAA_5 400 545 IPR003593 -
Csa03g00209 886 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 779 787 IPR008268 GO:0004176|GO:0004252|GO:0006508
Csa03g00209 886 ProSiteProfiles Lon N-terminal domain profile. 11 254 IPR003111 -
Csa03g00209 886 Coils Coil 886 886 - -
Csa03g00209 886 ProSiteProfiles Lon proteolytic domain profile. 691 876 IPR008269 GO:0004176|GO:0004252|GO:0006508
Csa03g00209 886 SUPERFAMILY Ribosomal protein S5 domain 2-like 694 873 IPR020568 -
Csa03g00209 886 Gene3D - 162 297 - -
Csa03g00209 886 SMART lon_5 10 254 IPR003111 -
Csa03g00209 886 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 618 IPR027417 -
Csa03g00209 886 TIGRFAM lon: endopeptidase La 13 874 IPR004815 GO:0004176|GO:0005524|GO:0006508
Csa03g00209 886 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 886 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Csa03g00209 886 CDD AAA 385 546 - -
Csa03g00209 886 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 886 IPR027501 GO:0004252|GO:0006515
Csa03g00209 886 Gene3D - 2 160 IPR046336 -
Csa03g00209 886 SUPERFAMILY PUA domain-like 11 253 IPR015947 -
Csa03g00209 886 Gene3D - 693 878 IPR014721 -
Csa03g00209 886 Gene3D - 544 682 - -
Csa03g00209 886 Pfam ATP-dependent protease La (LON) substrate-binding domain 13 254 IPR003111 -
Csa03g00209 886 MobiDBLite consensus disorder prediction 71 99 - -
Csa03g00209 886 MobiDBLite consensus disorder prediction 76 95 - -
Csa03g00209 886 Gene3D - 304 352 - -
Csa03g00209 886 Pfam Lon protease (S16) C-terminal proteolytic domain 668 875 IPR008269 GO:0004176|GO:0004252|GO:0006508
Csa03g00209 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 408 427 - -
Csa03g00209 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 694 710 - -
Csa03g00209 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 776 795 - -
Csa03g00209 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 806 825 - -
Csa03g00209 886 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 829 847 - -
Csa03g00209 886 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 886 - -
Csa03g00209 886 Gene3D - 365 543 IPR027417 -
Csa03g00209 886 Pfam ATPase family associated with various cellular activities (AAA) 404 541 IPR003959 GO:0005524|GO:0016887
Csa03g00209 886 PIRSF Lon_proteas 653 877 IPR004815 GO:0004176|GO:0005524|GO:0006508
Csa03g00209 886 PIRSF Lon_proteas 1 639 IPR004815 GO:0004176|GO:0005524|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00209 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - csv:101213865 1669.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00497 Csa-Chr2:3499662 Csa03g00209 Csa-Chr3:1649875 1.47E-154 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00209 Csa_Chr03 FPKM 2.467836 2.631376 1.024593 1.133915 1.792008 0.718705 1.265527 1.552443 0.436787 1.314298