Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00234 ATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGACTTGTGGTTGGGGTTCTTCCCGATCATGCTCAGAGCTTTCACAAGGTAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGCGCAGATGCTAGTGATCTGACAGGTCCCTCACAATCAACGGCGTGGGAGGCAATGGTGCCTTCTAGAAAGAGGACCTGTGTCGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGCGAACAACAGTCTTACTTTTCTGGATCTTCCGAGGAGGATTTGCTTTTCGAGAATGAAACTCCGATGGTCTCCGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAATCAGAAGCAAGCTCAATTTCAGTTGATAATAAGCAATTCTCTTTAAATGAGGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTACGAAACTCAGAACAAGTTTGTAAATTTTTCTACTCTTGGAATTGGGAGGAAGCACTCTACTGGACAAGGGTTCTTGAATGATCAAATTAAAAGGGACAGGCCTCAATCAGAAAGAATGCAAGCACTTGGAAATCGCAATTCCCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAACAATTGACGAGTGAAAATCAGCAAGAATTGATGAAGTATCTGCCTTCTGTTGATTCTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGTCCTCAGTTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTGCAAAAAGAGAAGACTGCAAGATTTTGAGTAGGCTGGTGTTGTTGGATTTGTCAAAATCAAAATGGGTGGAACGATATAATTTACTCAAGAAATGCAGTAGTGGAGAGTCTGTCCAAGGTTTTGCTGCTGCATCAAGTAGCCTTACGAATGGCAAGAGAGTGCTTGATGGCCAGAACAAAAAGCTTTCAGAAACCAGGACCACAATGAAGAGTCCCAAAAGGGTGATGACGAAGACAAGCACGGAAAGCAAGGAACTTGTTGACAGTGACGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAGGCTCTGCATTTTGATGAGGATAGTTCTGACCAAGATCTCCTACTGGATGTGAGGTCAAACAGTTCCTTTCCACAGGCAGAGCTTCTTCATCCAGCCCTGAGTTTTGTTGCTCAACCGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA 1413 42.75 MCKNKEVKLLKRKQYQDNGLVVGVLPDHAQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESSILPVHYETQNKFVNFSTLGIGRKHSTGQGFLNDQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDSEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKILSRLVLLDLSKSKWVERYNLLKKCSSGESVQGFAAASSSLTNGKRVLDGQNKKLSETRTTMKSPKRVMTKTSTESKELVDSDGSCFSPRSLFALPSDGGSFTLEALHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFVAQPASNSSSSVNLRLMHR* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1867421 1874612 - CsaV3_3G002340.1 Csa03g00234 521139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00234 470 Gene3D - 220 303 IPR038108 -
Csa03g00234 470 MobiDBLite consensus disorder prediction 41 55 - -
Csa03g00234 470 PANTHER OSJNBB0038F03.10 PROTEIN 1 469 IPR044589 -
Csa03g00234 470 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 227 336 IPR044867 -
Csa03g00234 470 Pfam Asx homology domain 216 299 IPR028020 -
Csa03g00234 470 MobiDBLite consensus disorder prediction 36 55 - -
Csa03g00234 470 PANTHER GATA TRANSCRIPTION FACTOR 26 1 469 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00234 - - - csv:101205985 894.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00234 Csa-Chr3:1867421 Csa03g04676 Csa-Chr3:40672546 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02256 CCT,ECH 1 224 C2C2-Gata Transcription Factor Family AT5G25830 56.3 1.2e-59 227.3
Csa06g03299 . 86 257 C2C2-Gata Transcription Factor Family AT4G34680 50.3 6.6e-37 151.4
Csa02g02256 CCT,ECH 35 189 C2C2-Gata Transcription Factor Family AT3G60530 53.4 7.7e-37 151.0
Csa04g00528 . 17 300 C2C2-Gata Transcription Factor Family AT5G66320 51.7 1.3e-66 250.4
Csa04g00528 . 23 296 C2C2-Gata Transcription Factor Family AT3G51080 50.5 1.4e-54 210.3
Csa06g03299 . 95 256 C2C2-Gata Transcription Factor Family AT4G36240 53.5 1.7e-41 166.4
Csa02g02256 CCT,ECH 3 224 C2C2-Gata Transcription Factor Family AT4G32890 52.4 7.3e-48 188.0
Csa03g04676 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.5 2.0e-135 479.6
Csa03g00234 . 3 446 C2C2-Gata Transcription Factor Family AT4G17570 50.3 1.5e-101 367.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00234 Csa_Chr03 FPKM 7.213362 7.361526 9.888509 8.564489 6.888409 6.556083 7.16392 19.363415 19.780815 22.580462