Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00234 ATGTGTAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAACAGTATCAAGATAATGGACTTGTGGTTGGGGTTCTTCCCGATCATGCTCAGAGCTTTCACAAGGTAGTGGATGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCGAACTCTGAGAGCTGTGCACAATTTGGTGGCGCAGATGCTAGTGATCTGACAGGTCCCTCACAATCAACGGCGTGGGAGGCAATGGTGCCTTCTAGAAAGAGGACCTGTGTCGGTCGTCCAAAGTCTACTGCAGTTGAGAAACTCACTAAAGATCTATACACCATTTTACGCGAACAACAGTCTTACTTTTCTGGATCTTCCGAGGAGGATTTGCTTTTCGAGAATGAAACTCCGATGGTCTCCGTAGAGATAGGACATGGAAGCGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAAGAGGAATCAGAAGCAAGCTCAATTTCAGTTGATAATAAGCAATTCTCTTTAAATGAGGTTCATTCAGAGTCGTCCATCCTTCCTGTACATTACGAAACTCAGAACAAGTTTGTAAATTTTTCTACTCTTGGAATTGGGAGGAAGCACTCTACTGGACAAGGGTTCTTGAATGATCAAATTAAAAGGGACAGGCCTCAATCAGAAAGAATGCAAGCACTTGGAAATCGCAATTCCCCTCTCTGTAATATAGATCTAACTGACATTCTAAACTTCAGAGAGTTTACGAAACAATTGACGAGTGAAAATCAGCAAGAATTGATGAAGTATCTGCCTTCTGTTGATTCTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGTCCTCAGTTCAAGGAGAATTTGAATTCTTTTAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCCGGGTGCAAAAAGAGAAGACTGCAAGATTTTGAGTAGGCTGGTGTTGTTGGATTTGTCAAAATCAAAATGGGTGGAACGATATAATTTACTCAAGAAATGCAGTAGTGGAGAGTCTGTCCAAGGTTTTGCTGCTGCATCAAGTAGCCTTACGAATGGCAAGAGAGTGCTTGATGGCCAGAACAAAAAGCTTTCAGAAACCAGGACCACAATGAAGAGTCCCAAAAGGGTGATGACGAAGACAAGCACGGAAAGCAAGGAACTTGTTGACAGTGACGGTTCTTGCTTCAGTCCAAGAAGTTTATTTGCTTTGCCTTCTGATGGAGGTTCCTTCACACTGGAGGCTCTGCATTTTGATGAGGATAGTTCTGACCAAGATCTCCTACTGGATGTGAGGTCAAACAGTTCCTTTCCACAGGCAGAGCTTCTTCATCCAGCCCTGAGTTTTGTTGCTCAACCGGCAAGCAATAGTAGTAGCTCGGTAAATCTTCGACTTATGCATCGCTGA 1413 42.75 MCKNKEVKLLKRKQYQDNGLVVGVLPDHAQSFHKVVDEDTSNRSSSGSAISNSESCAQFGGADASDLTGPSQSTAWEAMVPSRKRTCVGRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFENETPMVSVEIGHGSVLMRHPSSIAREEESEASSISVDNKQFSLNEVHSESSILPVHYETQNKFVNFSTLGIGRKHSTGQGFLNDQIKRDRPQSERMQALGNRNSPLCNIDLTDILNFREFTKQLTSENQQELMKYLPSVDSEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKILSRLVLLDLSKSKWVERYNLLKKCSSGESVQGFAAASSSLTNGKRVLDGQNKKLSETRTTMKSPKRVMTKTSTESKELVDSDGSCFSPRSLFALPSDGGSFTLEALHFDEDSSDQDLLLDVRSNSSFPQAELLHPALSFVAQPASNSSSSVNLRLMHR* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1867421 1874612 - CsaV3_3G002340.1 Csa03g00234 521139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00234 470 Gene3D - 220 303 IPR038108 -
Csa03g00234 470 MobiDBLite consensus disorder prediction 41 55 - -
Csa03g00234 470 PANTHER OSJNBB0038F03.10 PROTEIN 1 469 IPR044589 -
Csa03g00234 470 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 227 336 IPR044867 -
Csa03g00234 470 Pfam Asx homology domain 216 299 IPR028020 -
Csa03g00234 470 MobiDBLite consensus disorder prediction 36 55 - -
Csa03g00234 470 PANTHER GATA TRANSCRIPTION FACTOR 26 1 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00234 Csa-Chr3:1867421 Csa03g04676 Csa-Chr3:40672546 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00234 - - csv:101205985 894.034