Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00246 ATGAATCTCATTCAACTATTTATACCTTCAATATCCTCAATTCTAAAATTTCATTCACATTCTAATTTCTCTATCTCTTCTTCTTCTTCTTCTTCTTCTTCATTTTTCTTTTTCTTTTTTTTCTTTATTGAATTTACAATGATGTACGGACAAATTAACGGTTGTGAATCCGATTTTGTTCATCTTGAAACCATTCGTCGTCATTTATTGGGAGATTCAGAGGCTTTCCGATGTGGGAATTTCTCCCTTGCTGGAACTACCTCCCCTGTTTTCTGTCGGAGCTCAAGTTTTGGCAGCTTGTACCCTTGTTTAACTGAAAATTGGGGCGATTTGCCTCTCAAAGAGGATGATTCCGAAGACATGGTCCTCGCCGGCGTCCTCCGCGATGCCGTCAACGTCGGTTGGGTACCATCGCTTGAAACTTTCAATTTTGGGTTCTCTGATGTCAAGCCCGAGCCCGAGATTCTCTCTCCGGTGAACGTCTTGCCGGAAGTTAAGGTTCCGTCCACGGAGGTGGCTGCGGCCTTGCCGGCGGTCGTTCCCGCGAAGGGGAAGCATTACCGGGGTGTACGGCAGCGACCGTGGGGTAAGTTTGCGGCGGAGATTCGAGACCCGGCGAAGAACGGAGCTCGGGTTTGGCTTGGGACGTTTGAAACCGCGGAGGATGCGGCGCTTGCTTATGACCGGGCTGCTTATCGGATGCGTGGCTCCAAAGCTCTTCTTAATTTTCCACTTCGAGTTAATTCGGGTGAACCTGATCCGGTTAGAGTGACGTCGAAGCGGTCGTCACCTCGATCGTCCCCGGAACCTACTTCGTCGTCGTCGTCGGTAGAGAGTGGGTCTCCTAAGCGACGAAAGAAGGCGGAAGGTACCGCGGTGTCACCCGCCTTAGCTTCGCCGGAGTTGAATCAATTAGTGGTGGGGACGATTGGATTGCAAGTGGAAGCTGATGTGGCAAAATGTACAAGTGGCGAGTAA 978 49.69 MNLIQLFIPSISSILKFHSHSNFSISSSSSSSSSFFFFFFFFIEFTMMYGQINGCESDFVHLETIRRHLLGDSEAFRCGNFSLAGTTSPVFCRSSSFGSLYPCLTENWGDLPLKEDDSEDMVLAGVLRDAVNVGWVPSLETFNFGFSDVKPEPEILSPVNVLPEVKVPSTEVAAALPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSPRSSPEPTSSSSSVESGSPKRRKKAEGTAVSPALASPELNQLVVGTIGLQVEADVAKCTSGE* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1971594 1973396 - CsaV3_3G002460.1 Csa03g00246 521151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00246 325 SMART rav1_2 186 250 IPR001471 GO:0003700|GO:0006355
Csa03g00246 325 Pfam AP2 domain 186 236 IPR001471 GO:0003700|GO:0006355
Csa03g00246 325 SUPERFAMILY DNA-binding domain 186 246 IPR016177 GO:0003677
Csa03g00246 325 ProSiteProfiles AP2/ERF domain profile. 186 244 IPR001471 GO:0003700|GO:0006355
Csa03g00246 325 MobiDBLite consensus disorder prediction 255 279 - -
Csa03g00246 325 MobiDBLite consensus disorder prediction 250 298 - -
Csa03g00246 325 CDD AP2 185 244 IPR001471 GO:0003700|GO:0006355
Csa03g00246 325 Gene3D AP2/ERF domain 185 247 IPR036955 GO:0003700|GO:0006355
Csa03g00246 325 PRINTS Ethylene responsive element binding protein signature 210 226 IPR001471 GO:0003700|GO:0006355
Csa03g00246 325 PRINTS Ethylene responsive element binding protein signature 187 198 IPR001471 GO:0003700|GO:0006355
Csa03g00246 325 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 87 303 - -
Csa03g00246 325 PANTHER DNA-BINDING DOMAIN 87 303 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00246 Csa-Chr3:1971594 Csa06g03670 Csa-Chr6:29493518 2.87E-34 dispersed
Csa03g00246 Csa-Chr3:1971594 Csa03g00247 Csa-Chr3:1991077 7.52E-30 tandem
Csa03g00246 Csa-Chr3:1971594 Csa05g00460 Csa-Chr5:3003933 1.11E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31085 PF00847 AP2 1.50E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00246 K09286 - csv:101203663 504.212