Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00252 ATGTATATTGAGGAACTGAAGGAGGAAGGAGAGTTGCAGAGTGGGGAAGAGGGATATTCGGGTGTTATTGTTAGTAATTTGGAGAGTCAGAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTACTTTTCTATCCCACTTTGCTTTATAATGTTTTCAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAAGGTTGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCTGATGTTCCTCATTTGAAGGAGGCTGGCGTTCGAGGAGTGATAACACTAAACGAGCCATATGAGACTTTGGTTCCCTCAACTTTATATCGTGATCATGAAATTGATCATCTGACCATTCCGACTAGAGACTATTGCTTTGCACCTCTATTGAGTGACATTTGCCTTGCTGTAAATTTCATCCACAAAAATGCATCACTTGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACTGTTGTTATCTGCTATTTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTACAAGCATGTAAAATCAATCAGGCCAAGGGTGCTTTTAGCAGCATCACAGTGGCAGGCTGTTCTGGAATTCTACCACCTGGTTGTGCAGAAGGATGTTTCCTTCTGCCACATAGATGATACACGAAAGGAAGTATCAGGATCGTTGCATGATCTTATTGCATTTGATGATAGTTCTGTAGTTGTTGTAAAAGAATCCGATCTGGATGGATATGACCAAAGTATCATCCAAAGTGACATGGGTGATATCTGGGCAGATTTAAGTGTAGTCTGCAGGGTTCGTGTTGCTGGTCAGGCAGCACTCACAAGAATCTCTTGTTTGTGGCTCAGCTATCGAGCAAAACACCATAGCCAGAAGATTTCAGGAGATGATCTAGGTGTCGGGAAGGGCTGTTCACTTAGTGCTACTCATTTGGAAGGGTTCAGCGTGGACATCCATGTCTATTAA 1005 43.08 MYIEELKEEGELQSGEEGYSGVIVSNLESQSIVRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDKVDEFILLGAVPFPADVPHLKEAGVRGVITLNEPYETLVPSTLYRDHEIDHLTIPTRDYCFAPLLSDICLAVNFIHKNASLGQTTYVHCKAGRGRSTTVVICYLVQYKQMTPDEAYKHVKSIRPRVLLAASQWQAVLEFYHLVVQKDVSFCHIDDTRKEVSGSLHDLIAFDDSSVVVVKESDLDGYDQSIIQSDMGDIWADLSVVCRVRVAGQAALTRISCLWLSYRAKHHSQKISGDDLGVGKGCSLSATHLEGFSVDIHVY* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2015872 2020188 - CsaV3_3G002520.1 Csa03g00252 521157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00252 334 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 334 - -
Csa03g00252 334 ProSiteProfiles Dual specificity protein phosphatase domain profile. 69 216 IPR020422 GO:0006470|GO:0008138
Csa03g00252 334 Pfam Dual specificity phosphatase, catalytic domain 109 211 IPR000340 GO:0008138|GO:0016311
Csa03g00252 334 Gene3D Protein tyrosine phosphatase superfamily 69 219 IPR029021 -
Csa03g00252 334 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 63 215 IPR029021 -
Csa03g00252 334 CDD PTPMT1 69 211 IPR044596 GO:0004721
Csa03g00252 334 ProSitePatterns Tyrosine specific protein phosphatases active site. 158 168 IPR016130 GO:0016311|GO:0016791
Csa03g00252 334 SMART dsp_5 72 213 IPR020422 GO:0006470|GO:0008138
Csa03g00252 334 PANTHER - 1 334 - -
Csa03g00252 334 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 137 205 IPR000387 GO:0016311|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00252 - - - csv:101222975 671.389
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00073 Csa-Chr2:540334 Csa03g00252 Csa-Chr3:2015872 1.49E-101 dispersed
Csa03g00252 Csa-Chr3:2015872 Csa05g00878 Csa-Chr5:6703560 3.38E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa07g01336 . 65 374 Protein tyrosine phosphatase (PTP) family AT1G71860 66.0 1.6e-117 419.5
Csa01g00011 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.4 0.0e+00 1085.1
Csa06g01564 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.7 1.4e-40 162.9
Csa06g02399 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.3 5.1e-70 260.8
Csa05g02758 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.2e-113 406.4
Csa05g00878 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 3.2e-111 398.3
Csa03g03940 . 151 599 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Csa06g01343 . 15 215 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 8.4e-74 273.9
Csa06g02393 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 6.2e-69 257.7
Csa01g03339 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.5e-54 209.9
Csa03g00252 . 1 335 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 7.3e-102 367.5
Csa02g00073 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.6 4.6e-80 295.0
Csa03g00252 . 38 213 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Csa06g01343 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 5.7e-78 287.3
Csa06g02393 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Csa01g03339 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.9e-57 219.2
Csa01g03339 . 3 201 Protein tyrosine phosphatase (PTP) family AT3G02800 69.7 2.8e-80 295.0
Csa06g01343 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 3.1e-55 211.8
Csa06g02393 . 37 228 Protein tyrosine phosphatase (PTP) family AT3G02800 50.5 8.7e-50 193.7
Csa05g00673 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.6 1.0e-61 235.3
Csa03g03804 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.7 1.1e-155 546.6
Csa07g00734 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Csa06g02964 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 62.6 9.9e-198 686.8
Csa06g02964 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 63.0 2.8e-195 678.7
Csa07g00734 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 1.0e-181 633.6
Csa01g01880 . 2 1214 Protein tyrosine phosphatase (PTP) family AT5G58160 52.7 2.2e-284 975.7
Csa01g01730 . 1 455 Protein tyrosine phosphatase (PTP) family AT5G58160 57.3 1.1e-150 531.6
Csa01g01729 . 87 256 Protein tyrosine phosphatase (PTP) family AT5G58160 67.1 7.8e-56 216.5
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1176.0
Csa02g02472 . 1 861 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.4
Csa06g01286 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 57.6 8.9e-71 263.8
Csa03g00186 . 19 303 Protein tyrosine phosphatase (PTP) family AT2G35320 64.9 1.5e-109 392.9
Csa04g01589 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.5 3.4e-276 947.6
Csa04g01589 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.4 1.3e-251 865.9
Csa04g01589 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.3 1.8e-183 639.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008293 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00252 Csa_Chr03 FPKM 49.8176 51.58392 3.480204 2.913672 1.704347 1.397585 1.502136 4.366147 3.249713 4.28992