Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00252 ATGTATATTGAGGAACTGAAGGAGGAAGGAGAGTTGCAGAGTGGGGAAGAGGGATATTCGGGTGTTATTGTTAGTAATTTGGAGAGTCAGAGCATTGTTAGGTCTGATGTGAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTACTTTTCTATCCCACTTTGCTTTATAATGTTTTCAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAAGGTTGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCTGATGTTCCTCATTTGAAGGAGGCTGGCGTTCGAGGAGTGATAACACTAAACGAGCCATATGAGACTTTGGTTCCCTCAACTTTATATCGTGATCATGAAATTGATCATCTGACCATTCCGACTAGAGACTATTGCTTTGCACCTCTATTGAGTGACATTTGCCTTGCTGTAAATTTCATCCACAAAAATGCATCACTTGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACTGTTGTTATCTGCTATTTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTACAAGCATGTAAAATCAATCAGGCCAAGGGTGCTTTTAGCAGCATCACAGTGGCAGGCTGTTCTGGAATTCTACCACCTGGTTGTGCAGAAGGATGTTTCCTTCTGCCACATAGATGATACACGAAAGGAAGTATCAGGATCGTTGCATGATCTTATTGCATTTGATGATAGTTCTGTAGTTGTTGTAAAAGAATCCGATCTGGATGGATATGACCAAAGTATCATCCAAAGTGACATGGGTGATATCTGGGCAGATTTAAGTGTAGTCTGCAGGGTTCGTGTTGCTGGTCAGGCAGCACTCACAAGAATCTCTTGTTTGTGGCTCAGCTATCGAGCAAAACACCATAGCCAGAAGATTTCAGGAGATGATCTAGGTGTCGGGAAGGGCTGTTCACTTAGTGCTACTCATTTGGAAGGGTTCAGCGTGGACATCCATGTCTATTAA 1005 43.08 MYIEELKEEGELQSGEEGYSGVIVSNLESQSIVRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDKVDEFILLGAVPFPADVPHLKEAGVRGVITLNEPYETLVPSTLYRDHEIDHLTIPTRDYCFAPLLSDICLAVNFIHKNASLGQTTYVHCKAGRGRSTTVVICYLVQYKQMTPDEAYKHVKSIRPRVLLAASQWQAVLEFYHLVVQKDVSFCHIDDTRKEVSGSLHDLIAFDDSSVVVVKESDLDGYDQSIIQSDMGDIWADLSVVCRVRVAGQAALTRISCLWLSYRAKHHSQKISGDDLGVGKGCSLSATHLEGFSVDIHVY* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2015872 2020188 - CsaV3_3G002520.1 Csa03g00252 521157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00252 334 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 334 - -
Csa03g00252 334 ProSiteProfiles Dual specificity protein phosphatase domain profile. 69 216 IPR020422 GO:0006470|GO:0008138
Csa03g00252 334 Pfam Dual specificity phosphatase, catalytic domain 109 211 IPR000340 GO:0008138|GO:0016311
Csa03g00252 334 Gene3D Protein tyrosine phosphatase superfamily 69 219 IPR029021 -
Csa03g00252 334 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 63 215 IPR029021 -
Csa03g00252 334 CDD PTPMT1 69 211 IPR044596 GO:0004721
Csa03g00252 334 ProSitePatterns Tyrosine specific protein phosphatases active site. 158 168 IPR016130 GO:0016311|GO:0016791
Csa03g00252 334 SMART dsp_5 72 213 IPR020422 GO:0006470|GO:0008138
Csa03g00252 334 PANTHER - 1 334 - -
Csa03g00252 334 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 137 205 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00073 Csa-Chr2:540334 Csa03g00252 Csa-Chr3:2015872 1.49E-101 dispersed
Csa03g00252 Csa-Chr3:2015872 Csa05g00878 Csa-Chr5:6703560 3.38E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00252 - - csv:101222975 671.389