Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00254 ATGATCCCTTCTAAACACCATAATCTCGGTTTAACCCTTGGATTAACCCTCGATTCTCCTCCTCTACATCTCAATTCTTGGACTAATGATGCTTCTTCAGATCGGACATCGGAAACAGGGAGATCGCTTCTCAGAGGCATCGATGTGAATCGGATGCCGCCGTCGACGGCGGATTGTGAAGAGGAGGCGGCGATGTCGAGCCCTAACAGTACGGTATCGAGTGTGAGTGGGAAACGGAGTGAACGTGAGATGAACGGTGAAGATCTGGATGGGGATAGAGCTTGTTCGAGAGGAATTAGTGATGAAGAAGACGGTGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTTTTGGAAGAAAGCTTCAAAGAACATAATACTCTCAATCCGAAGCAAAAGTTGGCGTTGGCGAAACAATTGGGTCTCCGGCCAAGACAAGTCGAAGTTTGGTTCCAAAATAGAAGAGCAAGGACAAAGTTGAAGCAAACGGAAGTAGATTGCGAATTCCTAAAGAGATGCTGTGAAAATCTAACGGAGGAGAATAGACGGTTGCAAAAAGAAGTACAAGAACTGAGAGCACTCAAACTTTCCCCACAATTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCTGTTCCGCCCTCCTCCACATCAGCCCCCCAGCCCACTGTCACACGAATGGGCCAGGCCCAATCTCAGCCCCACCACGCTCGCCCTATCCACCACATCAACCCCTGGGCCTCCCCCATACCCACCCGGCCTTTCAACGCCCTTCACCCTCGCTCGTAA 828 50.6 MIPSKHHNLGLTLGLTLDSPPLHLNSWTNDASSDRTSETGRSLLRGIDVNRMPPSTADCEEEAAMSSPNSTVSSVSGKRSEREMNGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSSTSAPQPTVTRMGQAQSQPHHARPIHHINPWASPIPTRPFNALHPRS* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2030176 2032531 - CsaV3_3G002540.1 Csa03g00254 521159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00254 275 SUPERFAMILY Homeodomain-like 98 166 IPR009057 -
Csa03g00254 275 MobiDBLite consensus disorder prediction 48 111 - -
Csa03g00254 275 MobiDBLite consensus disorder prediction 80 111 - -
Csa03g00254 275 MobiDBLite consensus disorder prediction 62 79 - -
Csa03g00254 275 Pfam Homeobox associated leucine zipper 165 199 IPR003106 GO:0006355|GO:0043565
Csa03g00254 275 PANTHER - 25 264 - -
Csa03g00254 275 MobiDBLite consensus disorder prediction 225 275 - -
Csa03g00254 275 PRINTS Lambda-repressor HTH signature 136 145 IPR000047 GO:0003677
Csa03g00254 275 PRINTS Lambda-repressor HTH signature 145 161 IPR000047 GO:0003677
Csa03g00254 275 Pfam HD-ZIP protein N terminus 30 83 IPR006712 GO:0005634
Csa03g00254 275 SMART HOX_1 107 169 IPR001356 GO:0003677
Csa03g00254 275 MobiDBLite consensus disorder prediction 225 245 - -
Csa03g00254 275 CDD homeodomain 109 166 IPR001356 GO:0003677
Csa03g00254 275 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 25 264 - -
Csa03g00254 275 Pfam Homeodomain 109 163 IPR001356 GO:0003677
Csa03g00254 275 SMART halz 165 208 IPR003106 GO:0006355|GO:0043565
Csa03g00254 275 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Csa03g00254 275 Coils Coil 164 201 - -
Csa03g00254 275 Gene3D - 115 161 - -
Csa03g00254 275 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00254 Csa-Chr3:2030176 Csa03g00756 Csa-Chr3:6687287 3.20E-89 dispersed
Csa03g00250 Csa-Chr3:2009009 Csa03g00254 Csa-Chr3:2030176 3.99E-42 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31087 PF00046 Homeodomain 6.70E-17 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00254 K09338 - csv:101223208 535.798