Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa03g00254 | ATGATCCCTTCTAAACACCATAATCTCGGTTTAACCCTTGGATTAACCCTCGATTCTCCTCCTCTACATCTCAATTCTTGGACTAATGATGCTTCTTCAGATCGGACATCGGAAACAGGGAGATCGCTTCTCAGAGGCATCGATGTGAATCGGATGCCGCCGTCGACGGCGGATTGTGAAGAGGAGGCGGCGATGTCGAGCCCTAACAGTACGGTATCGAGTGTGAGTGGGAAACGGAGTGAACGTGAGATGAACGGTGAAGATCTGGATGGGGATAGAGCTTGTTCGAGAGGAATTAGTGATGAAGAAGACGGTGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTTTTGGAAGAAAGCTTCAAAGAACATAATACTCTCAATCCGAAGCAAAAGTTGGCGTTGGCGAAACAATTGGGTCTCCGGCCAAGACAAGTCGAAGTTTGGTTCCAAAATAGAAGAGCAAGGACAAAGTTGAAGCAAACGGAAGTAGATTGCGAATTCCTAAAGAGATGCTGTGAAAATCTAACGGAGGAGAATAGACGGTTGCAAAAAGAAGTACAAGAACTGAGAGCACTCAAACTTTCCCCACAATTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCTGTTCCGCCCTCCTCCACATCAGCCCCCCAGCCCACTGTCACACGAATGGGCCAGGCCCAATCTCAGCCCCACCACGCTCGCCCTATCCACCACATCAACCCCTGGGCCTCCCCCATACCCACCCGGCCTTTCAACGCCCTTCACCCTCGCTCGTAA | 828 | 50.6 | MIPSKHHNLGLTLGLTLDSPPLHLNSWTNDASSDRTSETGRSLLRGIDVNRMPPSTADCEEEAAMSSPNSTVSSVSGKRSEREMNGEDLDGDRACSRGISDEEDGETSRKKLRLTKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSSTSAPQPTVTRMGQAQSQPHHARPIHHINPWASPIPTRPFNALHPRS* | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2030176 | 2032531 | - | CsaV3_3G002540.1 | Csa03g00254 | 521159 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa03g00254 | 275 | SUPERFAMILY | Homeodomain-like | 98 | 166 | IPR009057 | - | |
Csa03g00254 | 275 | MobiDBLite | consensus disorder prediction | 48 | 111 | - | - | |
Csa03g00254 | 275 | MobiDBLite | consensus disorder prediction | 80 | 111 | - | - | |
Csa03g00254 | 275 | MobiDBLite | consensus disorder prediction | 62 | 79 | - | - | |
Csa03g00254 | 275 | Pfam | Homeobox associated leucine zipper | 165 | 199 | IPR003106 | GO:0006355|GO:0043565 | |
Csa03g00254 | 275 | PANTHER | - | 25 | 264 | - | - | |
Csa03g00254 | 275 | MobiDBLite | consensus disorder prediction | 225 | 275 | - | - | |
Csa03g00254 | 275 | PRINTS | Lambda-repressor HTH signature | 136 | 145 | IPR000047 | GO:0003677 | |
Csa03g00254 | 275 | PRINTS | Lambda-repressor HTH signature | 145 | 161 | IPR000047 | GO:0003677 | |
Csa03g00254 | 275 | Pfam | HD-ZIP protein N terminus | 30 | 83 | IPR006712 | GO:0005634 | |
Csa03g00254 | 275 | SMART | HOX_1 | 107 | 169 | IPR001356 | GO:0003677 | |
Csa03g00254 | 275 | MobiDBLite | consensus disorder prediction | 225 | 245 | - | - | |
Csa03g00254 | 275 | CDD | homeodomain | 109 | 166 | IPR001356 | GO:0003677 | |
Csa03g00254 | 275 | PANTHER | HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN | 25 | 264 | - | - | |
Csa03g00254 | 275 | Pfam | Homeodomain | 109 | 163 | IPR001356 | GO:0003677 | |
Csa03g00254 | 275 | SMART | halz | 165 | 208 | IPR003106 | GO:0006355|GO:0043565 | |
Csa03g00254 | 275 | ProSitePatterns | 'Homeobox' domain signature. | 140 | 163 | IPR017970 | GO:0000981|GO:0006355 | |
Csa03g00254 | 275 | Coils | Coil | 164 | 201 | - | - | |
Csa03g00254 | 275 | Gene3D | - | 115 | 161 | - | - | |
Csa03g00254 | 275 | ProSiteProfiles | 'Homeobox' domain profile. | 105 | 165 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g00254 | Csa-Chr3:2030176 | Csa03g00756 | Csa-Chr3:6687287 | 3.20E-89 | dispersed | |
Csa03g00250 | Csa-Chr3:2009009 | Csa03g00254 | Csa-Chr3:2030176 | 3.99E-42 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31087 | PF00046 | Homeodomain | 6.70E-17 | CL0123 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa03g00254 | K09338 | - | csv:101223208 | 535.798 |