Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00257 ATGGAAGATCCTCTTCAAAGATTCCAACTTCACTCTCAATCTTCATCCTCTTCATCAGATATCAAAAACTGCATCAAACAAAAAGCCTCCAAGAAAGTTAAAATCGGAAACGACGACAAACACCCAACTTATCGCGGCGTTCGAATGCGACAATGGGGAAAATGGGTTTCCGAAATAAGAGAACCAAAGAAGAAATCCAGAATTTGGTTAGGTACATTTTCCACTTCAGAAATGGCCGCTAGAGCTCACGACGTTGCCGCCAAAACGATCAAAGGTCATTCTGCTTACCTTAATTTCCCTGAATTGGCTCATCGTCTCCCTCGTCCAGCTAGTTCTTCTCCTAAAGACATTCGAGCCGCCGCTGCTAAAGCTGCCCTGTTTAATGATGAACAGAACCCCGGTGCGAAATCTGAAATGAATCTTAATTGCTGTGGCTCTTCTGCTGTTGCGGTCAAATCCGGTGGGGAAATCGATGATACTTTCTTTGATTTACCTGATCTGTTTATTGATGATCCTAATCATCAAATTGATACATTCTGTTTCTCCCAATTTGTTCCGATTGATGGTTTTGACTCTGTTTTTACACGGCCGTCGTCGCCATCGTCGTCGTCGGATTATTTCACTTACAGAGGTAGTCTTCTCTAG 645 43.1 MEDPLQRFQLHSQSSSSSSDIKNCIKQKASKKVKIGNDDKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTSEMAARAHDVAAKTIKGHSAYLNFPELAHRLPRPASSSPKDIRAAAAKAALFNDEQNPGAKSEMNLNCCGSSAVAVKSGGEIDDTFFDLPDLFIDDPNHQIDTFCFSQFVPIDGFDSVFTRPSSPSSSSDYFTYRGSLL* 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2069964 2071516 + CsaV3_3G002570.1 Csa03g00257 521162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00257 214 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Csa03g00257 214 MobiDBLite consensus disorder prediction 1 41 - -
Csa03g00257 214 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Csa03g00257 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 14 181 - -
Csa03g00257 214 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Csa03g00257 214 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Csa03g00257 214 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Csa03g00257 214 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Csa03g00257 214 MobiDBLite consensus disorder prediction 25 41 - -
Csa03g00257 214 Pfam AP2 domain 42 93 IPR001471 GO:0003700|GO:0006355
Csa03g00257 214 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Csa03g00257 214 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 181 - -
Csa03g00257 214 MobiDBLite consensus disorder prediction 7 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00257 Csa-Chr3:2069964 Csa06g00865 Csa-Chr6:6942444 2.91E-40 dispersed
Csa07g02268 Csa-Chr7:21132427 Csa03g00257 Csa-Chr3:2069964 2.97E-36 dispersed
Csa03g00257 Csa-Chr3:2069964 Csa02g00103 Csa-Chr2:717915 4.86E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31089 PF00847 AP2 1.60E-13 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00257 - - csv:101222736 385.185