Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00265 ATGAAGAGAGAAACAATGGAAGATTTTGCAATAATGAGTGGGTTGGTTGGAGTGCAGTTTGTATATGCAGGAAACTCAGTTTTTATGAGTTTTCTTATGTCTTTAGGGATTGATCCTTTAACCCTTGTTATCTTCTCTACCTTCTCTACTTTTCTCATTGTCTCTCCCGTTGCTGTTTATTTCGAAAGGTATAACTGGCCAAAGAAACTTAGTCTAAAGTTGATCCTTCAGCTTGTTCTCATATCTTTTGGAGGGGTTACGTTGTTTCAGTCCCTTTTACTGAAAGGAATACAGCTAACTTCGCCGACTTTAGCTACGGCGATGCCGAATCTCGCCCCTGGACTCATCTTTGCCATTGCTTGGATCTTTAGATTAGAAAAAGTTCAGCTAAGTTGCATCTATAGCAAGATCAAGATTTTAGGTACATTACTATGTGTGATAGGCGCATTCACCATGAGCATAATGCACAGTGCTCCATCGGATGTAGCTGGAAAAAATAGTATCCCACAACAATCACCTCTGAGTGAGCAACTGTTTGATGAACAGAAGATCCTCGGTTGTGCGTATCTCTTCGTGGCGATCATTATTTTATCTTGCATAGTTGTTCTGCAGGCAGCGACACTAGGCGATTTCCCGGCACCAATGTCGTTGTGTGCGATAACATCCCTCATCGGAGTGCTCTTAACCATAGGTGTACAGATAATTCAATATCACAGAATTGATATTGCATGGCCACTTCTAATCGGTGTTAAAGAATTGGCTGCCTATGTCATTCTAGGCGGAACGATAAGTGGCGCTTGCGTGAGCTTCAACGGGTGGGCGATGAAGAAACGAGGGCCAGTTTTGGTGTCAATGTTTAGTCCGATAGGAACAGTTTGTTCACTCGTTCTCTCAGTTATCACCTTAGGAGAATCCATCAACATTGGAAGCCTTGCTGGTATGTTCATGATGTTCACCGGCCTCTACTTCGTCCTATGGGCGAAAGGGAAGGAACGTTATGTGAACCGAAACCATCTCGAGAAAAGTTGA 1029 42.95 MKRETMEDFAIMSGLVGVQFVYAGNSVFMSFLMSLGIDPLTLVIFSTFSTFLIVSPVAVYFERYNWPKKLSLKLILQLVLISFGGVTLFQSLLLKGIQLTSPTLATAMPNLAPGLIFAIAWIFRLEKVQLSCIYSKIKILGTLLCVIGAFTMSIMHSAPSDVAGKNSIPQQSPLSEQLFDEQKILGCAYLFVAIIILSCIVVLQAATLGDFPAPMSLCAITSLIGVLLTIGVQIIQYHRIDIAWPLLIGVKELAAYVILGGTISGACVSFNGWAMKKRGPVLVSMFSPIGTVCSLVLSVITLGESINIGSLAGMFMMFTGLYFVLWAKGKERYVNRNHLEKS* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2140048 2143111 + CsaV3_3G002650.1 Csa03g00265 521170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00265 342 PANTHER WAT1-RELATED PROTEIN 10 338 IPR030184 GO:0016021|GO:0022857
Csa03g00265 342 PANTHER OS11G0588100 PROTEIN 10 338 - -
Csa03g00265 342 Pfam EamA-like transporter family 16 153 IPR000620 GO:0016020|GO:0016021
Csa03g00265 342 Pfam EamA-like transporter family 185 325 IPR000620 GO:0016020|GO:0016021
Csa03g00265 342 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 330 - -
Csa03g00265 342 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00265 Csa-Chr3:2140048 Csa04g01463 Csa-Chr4:14463477 4.01E-40 dispersed
Csa03g00265 Csa-Chr3:2140048 Csa05g00425 Csa-Chr5:2818496 4.67E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00265 - - csv:101220774 653.284