Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00277 ATGGCTTCTTCCATCGCTCTCCGAAGGCTTGCTGCTTCCTCTGCTACTAAGCTTTTCAATCCTGTTCGCTCCGCCTCTGTTCTCCCCTCCTCTGTTCTTCGTTCTTTCAACACCAATGCTCAGATGACCAACTACGACGATGACGACCGCTCTGTTGATGTGGACTCACGCTCTGACCGCTCCCTCTCTCGTTCTCGTGATCGTTATCCTGGTTTCGGAGATGTGTTCGATCCGTTTTCTCCGACTAGGAGCCTAAGCCAGGTGCTGAATCTGATGGATCAATTCATGGAGGACCCGTTTCTGGCAGCATCACGAGGAGTAGGAGCAGGTTCAAGGAGGGGCTGGGACGTGAAAGAAGACGACAACGCTCTATATCTCCGAATGGACATGCCAGGACTGAGCAAAGATGATGTGAGGGTGAGTGTGGAGCAGAACACACTGATCATCAAAGGAGAGGGAGCGAAAGAATCTGAAGACGAAGAAGATCGTAGACGATTCTCGAGCAGACTGGACTTGCCTGCGAATCTGTACGAACTGAATTCAATAAAAGCAGAGATGAAGAATGGGGTGCTGAAAGTGGCAGTGCCAAAAGTGAAGGAAGAAGAAAGGAAGGATGTGAGGCATGTTACTGTTGAGTGA 639 50.08 MASSIALRRLAASSATKLFNPVRSASVLPSSVLRSFNTNAQMTNYDDDDRSVDVDSRSDRSLSRSRDRYPGFGDVFDPFSPTRSLSQVLNLMDQFMEDPFLAASRGVGAGSRRGWDVKEDDNALYLRMDMPGLSKDDVRVSVEQNTLIIKGEGAKESEDEEDRRRFSSRLDLPANLYELNSIKAEMKNGVLKVAVPKVKEEERKDVRHVTVE* 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2251829 2254144 + CsaV3_3G002770.1 Csa03g00277 521182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00277 212 CDD ACD_sHsps-like 116 197 - -
Csa03g00277 212 Pfam Hsp20/alpha crystallin family 116 211 IPR002068 -
Csa03g00277 212 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 212 IPR044656 -
Csa03g00277 212 MobiDBLite consensus disorder prediction 44 66 - -
Csa03g00277 212 PANTHER HEAT SHOCK 22 KDA PROTEIN, MITOCHONDRIAL-LIKE 1 212 - -
Csa03g00277 212 Gene3D - 72 211 IPR008978 -
Csa03g00277 212 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 106 212 IPR002068 -
Csa03g00277 212 MobiDBLite consensus disorder prediction 46 66 - -
Csa03g00277 212 SUPERFAMILY HSP20-like chaperones 82 205 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00277 K13993 HSP20; HSP20 family protein - csv:101219106 354.369
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00277 Csa-Chr3:2251829 Csa05g00004 Csa-Chr5:35597 1.79E-23 dispersed
Csa03g00277 Csa-Chr3:2251829 Csa03g00278 Csa-Chr3:2255195 9.62E-121 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g533 . . . Bda08g00575 . . . . Cmo06g00800 Cmo16g01193 . . . . Sed04g1717 . . Bhi11g00196 Tan01g2027 Cmetu06g0652 . . . . . . . . . . . . . . . Lsi07g01303 . . Cme06g02574 . . . . . . . . . . . Cma06g00780 . Car06g00694 . Cpe08g00743 . . . . . . . . . . . . . . . . Csa03g00277 Chy06g02045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00277 Csa_Chr03 FPKM 13.739847 15.1567 13.243329 13.359433 7.61056 7.822115 8.621035 16.346079 20.220755 19.224909