Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00280 ATGAGGGGTATTTCCTTTCATTTTCAGGGGAAGGGGGAGTTGGAATTTTCAGCTGCTTTTTCTTCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTTAAGAAAGGGGAAGAACAACAAGAACAAGAACTAGACGAAGAACAAGAAGGGTTTTCTTATTTTGCTTTACCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGCTTCCACTCTCTCTTCTTCCTTTGGCGGCGGTGGCGGTGGCGGTTGTGTTCCTTCGCTTCCTCCTGAGACTCCTGCTGTTGAACCGGTCGCTGGAGCTGGTGTTGGTAACGTCATTTTTCCAGGTGGATTGGAGCGATGTGGGGTTGGATTAGAAGATTTGGAGAGTATGTGGTCGGAAACAGCCGGCCCAGAACCGTCGTTTCTCCGATGGTTCGCCGGAGATGTTGAAGATCCCAGTTTAGGGAGTAAAAGTGTTTTGGCTAATGGGAATATACCCTTTGATTTGGATGGCAATGCCGGTATCGGAATCGTCGATCAGGGTTCCGAATTTGACACCGGTTCTGGTAATGTTCTTGCCAACATTAATCCTAATTTATCGTTTCCTCTTGCTGCTTGTGCTGGGTTTTCTGATGTTAATGGTAACAATAAGTCTTTTAATAGAACCACTTGTGGAGGGGTTGTTAATTACAAGAGTTCTAGTTTGGGTTCGAACAATCGCCATGGAAATTTCAATGTTCAGAACCCTATCTTTACTGGGTCTCTTGAAAATCTTGTTGTTCCCGTTTCTGGTATGATTTATCCTCAACAACTTCAGCCATTTGAGAGCCCTGATGAGAAACCTCAGAATTTAAATACTCAGGTTTTGTTGAACCAACATCAGCAGCCTCAGAACCCTAGCTTTTTTGTGCCATTGACGTTTGGTCAACAGGAACAGCAGCTCCAGCCTCAACTGAAGAGGCGTAATTCAAGTGGAGGACTTGACCCCAACCCGAATGGGCAGATCCTGAAAGTCCCGTTTATGGATCCAGGGAATGAGATTTTTCTGAGGAATCATCAGTTGCAGGTGTTGCAACAGCAGCAGCAGCAGCAGCTTGGTTATCCTCCGGGTTTGCAGTTTCTTCCTCAGCAGAAGGCAATGTCGCCCAAGCCAAAAGTTGTAGGGCTTGGCGACGAAATGTCGTATCACAATCCCCCACAGCAACAGCATCAGCATGCTTTGCTCGACCAGCTCTACAAGGCAGCAGAGCTGGTAGGGACTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTCCTTATGAATAACCCAGTTAATCCTCCTCCTCCTCGCTGCCCGACACCGTTTGATGTGATCTTCAAGATGGGTGCTTACAAAGTGTTTTCGGAAATTTCCCCACTCATTCAGTTTGTGAATTTCACCTGCAACCAGGCACTGCTTGAGGCGCTCGATGACATTGATCGAATTCACATTGTAGATTTTGATATTGGTTTTGGAGCTCAGTGGGCTTCTTTTATGCAGGAACTGTCCTTGAGGAACCGAGGTGCACCTTCGCTCAAAATCACTGCTTTTGCCTCTCCCTCAACTCACCATCCAATTGAACTTGGGCTTATGCGCGAAAATCTCACTCAATTTGCTAATGACATTGGAATAAGTTTTGAGTTTGAAGTGGTTAACTTTGATTCTTTGAACCAGAACTCGTTTTCTTTGCCATTTCCACGGTCAAGCGAAAATGAGGCCGTTGCAGTAAACTTCCCTCTATGGTGTTCATCGAATCAACCAGCAATGCTTCCGTCTCTCCTCCGCTTCATCAAGCAACTCTCACCGAAAATTGTGGTTTCACTAGACCGAGGGTGTGATCGAAGTGACCTCCCCTTTCCTCAGCATATGCTTCAGGCACTTCAGTCCTACATTAACCTCCTGGAATCTCTGGATGCTATCAATATGAATTCAGATGCTGTGAACAAGATCGAAAGGTTTCTTTTGCAACCCAGAATTGAAAGTACGGTTCTGGGACGACTTCGAGCACCTGAAAGAATGCCCCCTTGGAAGACACTCTTTGCCTCTGCTGGGTTTACGCCTGTAACCTTTAGCAACTTCACCGAAACTCAAGCAGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCACGTTGAGAAACGCCAAGCTTCCCTAGTTTTATGCTGGCAGCGTCGGGAGCTCATATCTGCTTCAGCATGGAGATGTTGA 2325 46.67 MRGISFHFQGKGELEFSAAFSSSSPICSGFAEKWVKKGEEQQEQELDEEQEGFSYFALPNNEPTSVLHMRSPSPPTSASTLSSSFGGGGGGGCVPSLPPETPAVEPVAGAGVGNVIFPGGLERCGVGLEDLESMWSETAGPEPSFLRWFAGDVEDPSLGSKSVLANGNIPFDLDGNAGIGIVDQGSEFDTGSGNVLANINPNLSFPLAACAGFSDVNGNNKSFNRTTCGGVVNYKSSSLGSNNRHGNFNVQNPIFTGSLENLVVPVSGMIYPQQLQPFESPDEKPQNLNTQVLLNQHQQPQNPSFFVPLTFGQQEQQLQPQLKRRNSSGGLDPNPNGQILKVPFMDPGNEIFLRNHQLQVLQQQQQQQLGYPPGLQFLPQQKAMSPKPKVVGLGDEMSYHNPPQQQHQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDIDRIHIVDFDIGFGAQWASFMQELSLRNRGAPSLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEVVNFDSLNQNSFSLPFPRSSENEAVAVNFPLWCSSNQPAMLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAVNKIERFLLQPRIESTVLGRLRAPERMPPWKTLFASAGFTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWRC* 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2263515 2268337 - CsaV3_3G002800.1 Csa03g00280 521185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00280 774 MobiDBLite consensus disorder prediction 316 335 - -
Csa03g00280 774 PANTHER SCARECROW-LIKE PROTEIN 6 29 773 - -
Csa03g00280 774 MobiDBLite consensus disorder prediction 316 334 - -
Csa03g00280 774 ProSiteProfiles GRAS family profile. 402 773 IPR005202 -
Csa03g00280 774 MobiDBLite consensus disorder prediction 64 86 - -
Csa03g00280 774 Pfam GRAS domain family 412 773 IPR005202 -
Csa03g00280 774 MobiDBLite consensus disorder prediction 64 100 - -
Csa03g00280 774 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 29 773 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00280 Csa-Chr3:2263515 Csa06g00917 Csa-Chr6:7387575 3.67E-170 dispersed
Csa03g00280 Csa-Chr3:2263515 Csa06g00941 Csa-Chr6:7561913 4.11E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31091 PF03514 GRAS 2.30E-95 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00280 - - csv:101218630 1436.78