Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00286 ATGGAAGAGATTAGAGCCATTACAAACCATAAAAAAACTCCCTTCAATATCATTATTCCTCTCCAAATGGCTTCCAAAATTTCATCAACCACTTCCCTTCTCCTTCTTCTCAACCTCCTCTTCTTCACTATGGTCACCTCCACCTACGTCCCTTGCCCGCCGCCGCCACAGAAGCACCCCAAGGGCGTTCCCTCGAAGCAGCCAACACCACAGCCAAAGTGCCCAAAGGACACTCTCAAGCTCGGCGTTTGCGCTGACTTGCTCGATGGTCTAGTGCACGTCGTGATCGGCGCACCACCGAAAACCCCATGTTGCACACTAATCCAGGACTTAGTTGATCTTGAAGCTGCTCTTTGTCTTTGTACCGCGGTTAAAGCAAAGGCCTTAGGGCTCAAAATTGACCTCTCAGTTTCCCTCAGCTTGCTCTTGAACTATTGTGGAAAGAAGGTTCCAAATGGCTTCAAATGCCCTGCTTAA 477 49.06 MEEIRAITNHKKTPFNIIIPLQMASKISSTTSLLLLLNLLFFTMVTSTYVPCPPPPQKHPKGVPSKQPTPQPKCPKDTLKLGVCADLLDGLVHVVIGAPPKTPCCTLIQDLVDLEAALCLCTAVKAKALGLKIDLSVSLSLLLNYCGKKVPNGFKCPA* 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2321727 2328268 + CsaV3_3G002860.1 Csa03g00286 521191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00286 158 Gene3D - 71 158 IPR036312 -
Csa03g00286 158 PANTHER - 23 156 - -
Csa03g00286 158 SMART aai_6 74 156 IPR016140 -
Csa03g00286 158 PANTHER - 23 156 - -
Csa03g00286 158 CDD HPS_like 72 156 IPR027923 -
Csa03g00286 158 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 77 157 IPR036312 -
Csa03g00286 158 Pfam Hydrophobic seed protein 74 157 IPR027923 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00286 - - - csv:101217924 253.062
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g00286 Csa05g00414 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00286 Csa-Chr3:2321727 Csa05g00412 Csa-Chr5:2727789 1.38E-33 dispersed
Csa03g00286 Csa-Chr3:2321727 Csa03g00287 Csa-Chr3:2343747 3.51E-18 tandem
Csa03g00286 Csa-Chr3:2321727 Csa05g00408 Csa-Chr5:2712454 3.85E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g518 Blo02g01047 . . . . . Bma07g01600 . Cmo06g00795 . . Cma15g01133 . . Sed03g1246 . . Bhi11g00206 Tan01g2018 Cmetu06g2397 . . Mch10g1550 . Cla10g00267 Cam10g0275 Cec10g0283 Cco10g0279 Clacu10g0277 Cmu10g1117 Cre10g0526 . . . . Lsi07g01312 Csa05g00414 Chy09g01096 Cme06g02585 . Blo19g00256 . . Bpe08g01433 . . Bma12g00161 . . Cmo15g01192 Cma06g00775 . . . . . Bhi12g00431 . . Lac11g2276 . . Lcy12g1820 Cla01g00386 Cam01g0403 Cec01g0395 Cco01g0416 Clacu01g0404 Cmu01g0385 Cre09g2123 Lsi09g00416 Csa03g00286 Chy06g02037 Cme09g01625
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000088 2 11 1 5 4 10 1 11 11 11 13 11 17 13 14 20 10 12 1 11 14 4 3 8 10 9 6 10 10 3 266
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00286 Csa_Chr03 FPKM 401.285156 445.727692 430.676239 432.36145 183.675095 209.355896 201.108002 387.484558 379.62674 386.441101