Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00288 ATGCATTCTCAACTCATAGAAGCCCTCCAGGTAAACAAGGGGATATCACATCTCTACGGTTTCAAATTAAACATGGCTTCTCCCAAAACCACAACCTCAATTGCTTTGTTCTTCTGCCTTAACCTTCTCTTCTTTTCCCTTGTCACTGCTTGTGGCTCGTGTTCTCACCCTGTCACAAGGCCAAAACCAAGCCCGAGTTTTGGGGGTCATCCTGGTCATGGTGGAAGCCCTGGTTCCGGCAGTAGTCCTGGCTCCGGTGGAAGCCCCGGTTCCGGTGGTAGTCCTGGAGCAGGTGGAAGCCCAGGTTCCGGTGGTAGTCCTGGCTCCGGTGGAAGCCCAGGTTCCGGAGGTAGTCCTGGCTCTGGTGGAAGCCCAGGTTCCGGTGGTAGTCCTGGCTCTGGTGGAACTCCTGGTTCCGGTGGTAGTCCTGGCTCTGGTGGAACTCCTAGTCCCGGTTCAGGTGGCAATAATCCAGGCACAGGTGGAGGTACTTGTCCAAGAGATGCTCTCAAGATAGGTATATGTGCTAGAGTGCTTTCCCTAGTAAACGCAACTATTGGTTCACCACCTGTTACTCCATGTTGCACTCTGATTCAAGGGCTAGCTGATCTTGAAGCTGCTATTTGTCTTTGCACTGCAATAAGAGCAAGTATTCTAGGCCTTAATATAAACCTCCCAATTAATCTCAGCTTGCTACTTAACGTTTGTAGCAGAAACAGTCCTCGTGAATTCGAATGTCCCTAA 744 50.81 MHSQLIEALQVNKGISHLYGFKLNMASPKTTTSIALFFCLNLLFFSLVTACGSCSHPVTRPKPSPSFGGHPGHGGSPGSGSSPGSGGSPGSGGSPGAGGSPGSGGSPGSGGSPGSGGSPGSGGSPGSGGSPGSGGTPGSGGSPGSGGTPSPGSGGNNPGTGGGTCPRDALKIGICARVLSLVNATIGSPPVTPCCTLIQGLADLEAAICLCTAIRASILGLNINLPINLSLLLNVCSRNSPREFECP* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2348859 2350076 - CsaV3_3G002880.1 Csa03g00288 521193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00288 247 Gene3D - 164 247 IPR036312 -
Csa03g00288 247 PANTHER - 29 246 - -
Csa03g00288 247 MobiDBLite consensus disorder prediction 105 160 - -
Csa03g00288 247 PANTHER HYPRP2 29 246 - -
Csa03g00288 247 SMART aai_6 39 246 IPR016140 -
Csa03g00288 247 CDD HPS_like 165 246 IPR027923 -
Csa03g00288 247 Pfam Hydrophobic seed protein 164 247 IPR027923 -
Csa03g00288 247 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 167 247 IPR036312 -
Csa03g00288 247 MobiDBLite consensus disorder prediction 55 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00288 - - - csv:101220551 174.096
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g00288 Csa05g00410 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00288 Csa-Chr3:2348859 Csa05g00410 Csa-Chr5:2718419 4.38E-37 dispersed
Csa03g00293 Csa-Chr3:2411196 Csa03g00288 Csa-Chr3:2348859 2.75E-08 dispersed
Csa03g00287 Csa-Chr3:2343747 Csa03g00288 Csa-Chr3:2348859 3.41E-16 tandem
Csa03g00288 Csa-Chr3:2348859 Csa03g00289 Csa-Chr3:2364773 2.67E-15 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g516 . . . Bda08g00572 Bpe05g00585 Bpe07g00168 Bma07g00990 . Cmo06g00792 . . Cma15g01136 . . Sed01g4005 . . Bhi11g00207 Tan01g2015 Cmetu06g0151 . Hepe06g1146 Mch10g1548 . . . . . . . . . . . . Lsi07g01314 Csa05g00410 Chy09g01101 . . . . Bda09g00096 . . Bma05g00768 Bma12g00635 . Cmo02g01588 Cmo15g01194 Cma06g00771 . . . . . Bhi12g00429 . . Lac11g2267 Hepe06g1140 . Lcy12g1814 Cla01g00384 Cam01g0400 Cec01g0393 Cco01g0414 . . Cre09g2126 Lsi09g00414 Csa03g00288 Chy06g02035 Cme09g01627
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000088 2 11 1 5 4 10 1 11 11 11 13 11 17 13 14 20 10 12 1 11 14 4 3 8 10 9 6 10 10 3 266
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00288 Csa_Chr03 FPKM 84.358917 91.729591 54.841663 54.7938 40.587402 45.414722 41.945011 48.466286 44.228512 45.393444