Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00295 ATGGATTCTAAAAGAATTTCAAATGCTACCATCTTTCTTGTCCTAAATCTTGTATTTTTTGCCTTTGTTAACGTATGCCATGCCTGCAACGATCCAAAGCCGAAGCCGACTCCGAAGCCTTACCCAAACCCTAACCCTACTCCAGTAGTCAAGAGCTGCCCTAGAGATGCCCTAAAGCTTGGCGTGTGCACAAAGCTATTGAACGGACCGGTCAGTGCACTTGTGGGGTCCTTACCAAACACTCAATGCTGCTCGCTTCTCGATGGGCTTATCGACCTCGAAGCCGCAGTGTGTCTTTGCACAGCCATCAAAGCCAATGTTCTTGGTATCAACATTAACATCCCTATTTCTTTGAGCTTGCTTGTCAATGTTTGTGGAAAGAAGGTTCCCTCTGAATTCCAGTGTGCCTAA 411 46.23 MDSKRISNATIFLVLNLVFFAFVNVCHACNDPKPKPTPKPYPNPNPTPVVKSCPRDALKLGVCTKLLNGPVSALVGSLPNTQCCSLLDGLIDLEAAVCLCTAIKANVLGININIPISLSLLVNVCGKKVPSEFQCA* 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2427151 2428410 + CsaV3_3G002950.1 Csa03g00295 521200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00295 136 CDD HPS_like 50 135 IPR027923 -
Csa03g00295 136 Pfam Hydrophobic seed protein 53 136 IPR027923 -
Csa03g00295 136 Gene3D - 51 136 IPR036312 -
Csa03g00295 136 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 7 135 - -
Csa03g00295 136 SMART aai_6 53 135 IPR016140 -
Csa03g00295 136 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 55 135 IPR036312 -
Csa03g00295 136 PANTHER - 7 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00295 - - - csv:101223145 244.202
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g00295 Csa05g00408 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00295 Csa-Chr3:2427151 Csa05g00414 Csa-Chr5:2737344 2.57E-32 dispersed
Csa03g00289 Csa-Chr3:2364773 Csa03g00295 Csa-Chr3:2427151 7.17E-18 proximal
Csa02g02400 Csa-Chr2:21227792 Csa03g00295 Csa-Chr3:2427151 1.40E-27 transposed
Csa06g00919 Csa-Chr6:7407881 Csa03g00295 Csa-Chr3:2427151 5.02E-27 transposed
Csa03g00295 Csa-Chr3:2427151 Csa05g00406 Csa-Chr5:2696310 4.87E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g515 . . . . Bpe05g00586 . . . . . . Cma15g01138 . . Sed01g4008 . . Bhi11g00209 Tan01g2014 Cmetu09g0055 . . Mch10g1543 . Cla10g00273 Cam10g0282 Cec10g0290 Cco10g0287 Clacu10g0284 Cmu10g1124 Cre10g0532 . . Cone6ag0687 . Lsi07g01317 Csa05g00408 Chy09g01104 Cme06g02599 . . . . . . . . . . Cmo15g01197 . . . . . . Bhi12g00426 . . . . . Lcy12g1811 Cla01g00382 Cam01g0399 Cec01g0391 Cco01g0412 . . Cre09g2128 Lsi09g00412 Csa03g00295 . Cme09g01630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000088 2 11 1 5 4 10 1 11 11 11 13 11 17 13 14 20 10 12 1 11 14 4 3 8 10 9 6 10 10 3 266
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00295 Csa_Chr03 FPKM 17.730497 18.155613 30.295227 28.490131 14.921164 15.309349 17.342184 20.608038 29.00309 25.845882