Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00299 ATGCAATCTCTCTTCCCAACGCCATTTTTACCATTTTTAATTCCTTCCTCCAATAACACAACGAAACACAGACTTTTCCTTTCTTTTCATTTTCTTCAAATCTCTGAAAACAGAGAGAGCAATAAATTAATAACAATGTCGAGGACTATTGAAGAAGAAGAAGATCCTCGCATCAATGGCATCCGAACCAAAATTCGAGTGGTTCCTAATTTTCCAAAACCAGGTATACTGTTTCAGGACATCACAACTCTGTTACTTGAACCTAAAGCGTTCAAGGATACCATTGATTTGTTCGTTGAACGATACAAGGGCAAAAACATCTCCGTCGTTGCAGGAATTGAGGCTAGAGGGTTTATTTTTGGTCCTCCAATTGCTTTGGCTATTGGAGCCAAGTTTGTGCCCTTGAGAAAACCAAAGAAATTACCTGGTGAAGTAATGCATGAAGAGTACGTTTTGGAATATGGAAGAGATTGCATAGAAATGCATGTTGGGGCTGTTGAGGCTGGGGAACGTGCTTTGGTTGTTGATGACTTGATTGCCACTGGTGGTACTCTCTCTGCAGCCATCAATTTACTTGAACGAGCGGGAGCCGAAGTGGTTGAATGTGCTTGTGTAATTGAATTACCAGAGTTGAAGGGTCGGGAGAGATTAAGCGGGAAATCATTGTACATTTTAGTGGAGTATCGACGCGGTTAA 696 41.24 MQSLFPTPFLPFLIPSSNNTTKHRLFLSFHFLQISENRESNKLITMSRTIEEEEDPRINGIRTKIRVVPNFPKPGILFQDITTLLLEPKAFKDTIDLFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGEVMHEEYVLEYGRDCIEMHVGAVEAGERALVVDDLIATGGTLSAAINLLERAGAEVVECACVIELPELKGRERLSGKSLYILVEYRRG* 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2520811 2528192 + CsaV3_3G002990.1 Csa03g00299 521204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00299 231 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 53 228 - -
Csa03g00299 231 Hamap Adenine phosphoribosyltransferase [apt]. 61 228 IPR005764 GO:0003999|GO:0005737|GO:0006168
Csa03g00299 231 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 3-RELATED 53 228 - -
Csa03g00299 231 SUPERFAMILY PRTase-like 60 220 IPR029057 -
Csa03g00299 231 TIGRFAM apt: adenine phosphoribosyltransferase 62 228 IPR005764 GO:0003999|GO:0005737|GO:0006168
Csa03g00299 231 Pfam Phosphoribosyl transferase domain 96 213 IPR000836 -
Csa03g00299 231 CDD PRTases_typeI 95 227 IPR000836 -
Csa03g00299 231 Gene3D - 48 228 IPR029057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00299 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - csv:101218731 445.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01900 Csa-Chr2:17979681 Csa03g00299 Csa-Chr3:2520811 6.02E-99 transposed
Csa02g02398 Csa-Chr2:21221360 Csa03g00299 Csa-Chr3:2520811 6.03E-95 transposed
Csa03g00299 Csa-Chr3:2520811 Csa05g00402 Csa-Chr5:2627784 4.43E-109 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g02398 . 33 189 PRT Gene Family AT1G80050 78.3 4.0e-66 247.7
Csa03g00299 . 77 227 PRT Gene Family AT1G80050 75.5 9.3e-63 236.5
Csa05g00402 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Csa02g01900 . 107 256 PRT Gene Family AT1G80050 70.7 8.4e-56 213.4
Csa02g02398 . 1 148 PRT Gene Family AT5G11160 79.7 7.4e-63 236.9
Csa05g00402 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Csa02g01900 . 83 222 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Csa03g00299 . 55 192 PRT Gene Family AT5G11160 72.5 1.4e-53 206.1
Csa02g01900 . 78 258 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Csa03g00299 . 51 227 PRT Gene Family AT1G27450 75.1 1.3e-73 272.7
Csa05g00402 . 7 180 PRT Gene Family AT1G27450 73.6 1.6e-71 265.8
Csa02g02398 . 11 183 PRT Gene Family AT1G27450 68.8 3.5e-66 248.1
Csa02g01318 . 74 558 PRT Gene Family AT2G16570 85.0 1.0e-241 832.8
Csa02g01318 . 73 558 PRT Gene Family AT4G34740 85.4 1.6e-242 835.5
Csa02g01318 . 30 531 PRT Gene Family AT4G38880 70.7 3.5e-199 691.4
Csa02g01900 . 78 258 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Csa03g00299 . 51 227 PRT Gene Family AT1G27450 75.1 1.3e-73 272.7
Csa05g00402 . 7 180 PRT Gene Family AT1G27450 73.6 1.6e-71 265.8
Csa02g02398 . 11 183 PRT Gene Family AT1G27450 68.8 3.5e-66 248.1
Csa02g02398 . 33 189 PRT Gene Family AT1G80050 78.3 4.0e-66 247.7
Csa03g00299 . 77 227 PRT Gene Family AT1G80050 75.5 9.3e-63 236.5
Csa05g00402 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Csa02g01900 . 107 256 PRT Gene Family AT1G80050 70.7 8.4e-56 213.4
Csa03g00299 . 51 144 PRT Gene Family AT4G22570 87.2 3.7e-44 174.1
Csa05g00402 . 6 104 PRT Gene Family AT4G22570 80.8 1.4e-43 172.2
Csa02g01900 . 82 174 PRT Gene Family AT4G22570 80.6 1.6e-39 158.7
Csa02g02398 . 11 100 PRT Gene Family AT4G22570 77.8 4.4e-37 150.6
Csa03g00299 . 52 143 PRT Gene Family AT4G12440 87.0 4.6e-41 163.7
Csa05g00402 . 1 96 PRT Gene Family AT4G12440 82.3 2.3e-40 161.4
Csa02g01900 . 78 173 PRT Gene Family AT4G12440 79.2 4.8e-38 153.7
Csa02g02398 . 1 148 PRT Gene Family AT5G11160 79.7 7.4e-63 236.9
Csa05g00402 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Csa02g01900 . 83 222 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Csa03g00299 . 55 192 PRT Gene Family AT5G11160 72.5 1.4e-53 206.1
Csa06g00490 . 1 186 PRT Gene Family AT1G71750 64.5 1.1e-68 256.5
Csa07g01059 . 16 468 PRT Gene Family AT1G55810 85.4 3.1e-225 777.7
Csa03g02052 . 19 482 PRT Gene Family AT1G55810 73.1 4.3e-198 687.6
Csa07g01059 . 65 467 PRT Gene Family AT3G27440 77.2 1.5e-184 642.5
Csa03g02052 . 80 482 PRT Gene Family AT3G27440 75.2 1.2e-178 622.9
Csa03g02052 . 1 483 PRT Gene Family AT3G27190 86.0 7.7e-246 846.3
Csa07g01059 . 3 467 PRT Gene Family AT3G27190 74.2 8.3e-208 719.9
Csa04g01535 . 3 289 PRT Gene Family AT3G53900 66.6 3.0e-107 385.2
Csa07g01059 . 1 468 PRT Gene Family AT4G26510 84.5 3.6e-232 800.8
Csa03g02052 . 11 482 PRT Gene Family AT4G26510 75.4 4.3e-209 724.2
Csa03g02052 . 1 482 PRT Gene Family AT5G40870 85.9 5.0e-245 843.6
Csa07g01059 . 3 470 PRT Gene Family AT5G40870 73.4 2.4e-207 718.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00299 Csa_Chr03 FPKM 17.041164 19.897177 4.507463 4.088919 3.253247 2.568783 2.779015 0.472409 0.512452 0.311887