Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00301 ATGTTATCTCCTCTCAATTTCCTCCCAACTTCCCGCCGCGTGGCAGTAATCGGCGCCGGTGCCGGTGGCCTCGTCACTGCCCGTGAGCTCGGCCGCGAGGGCCACCATGTCGTCGTTTTCGAACGTAATACTCGAATCGGAGGGACCTGGGTATATTCCTCAGAGATTGAATCCGACCCACTTGGACTCGACCCAAATCGGACCCGAATTCACAGCAGTCTCTACAAATCTCTACGCACCAATCTCCCCAGAGAACTCATGGGGGTCCGCGATTACCCTTTTGTTCCTCGAGAAGGGGAGGATAGAGATCCGAGGCGATTTCCAAGTCACCGGGAGGTTCTGAAGTATTTAGAAGATTTCGCTAATGAATTTGGGATTTGTAAATTGGTGAGATTTGGAACTGAGGTGGTATTTGCTGGTCTGGAGGAGGTTGGGAAATGGAGGATTGAATTTAGATGTGAAAATGGGGATGTTGAAGAAGACCTTTTTGATGCTCTGGTTGTTTGTGTTGGCAATTATTCACAGCCTCGAGTGGCAGAGATTCCTGGGATTGATGGATGGCCTGGGGAGCAATTACATAGTCACAATTATCGTGATCCCGAACCATTTCGGGGTAAGGTTGTTGTGTTGATAGGTTATTCTTCGAGTGGTACGGACATTTCTCAGGAGCTCATTGGGGTTGCCAAAGAAATTCATATTGCTTGCAGGCCAGCTAAAACAGAGTCTTCGGACGAAAAATCAATTATTAGTAACGTCTCATTTCATCCAATGATCGAAAGTGTCCATAAAGATGGAACGGTGGTCTTTCAAGACGGGTCCGTCGTTTCGGCTGATGTTATTCTGCATTGTACTGGGTACAAATATCATTTCCCGTTTCTTGAAACCAATGGCACTGTTACGGTGGACGACAACCGTGTAGGACCTCTTTTCAAGCATGTCTTCCCCCCAGCATTGGCCCCAGGGCTTTCCTTCGTTGGGTTACCATTTAAGGTTGTTCCTTTTGTCATATTTGAGCTTCAAAGCAATTGGATTGCTGGTGTTTTATCAAACAGGATTGCACTTCCATCGAAAGAGGAAATGTTGGCAGATGTTAAAGCTTTTTATGAAGAACTCGAAGCTCGTGGCAAGCCCAAGCATCGGACCCATAAATTGGGTGGTTATACGCCTGCCTACTGTAACTGGCTTGCAGCAACTTGTGGTTGTCCTCCCTATGAAGAATGGAGAAAGGAAATGTTTGTTGCTACTGATATTAATAAAGTGGCCAATCTTGAGTCATACCGTGATGATTGGCATGACGATGAGTTGATTCATCAAGCTTATGAAGAATTTGGCAAGTATACTACTACAAATGAAGGAAGTCAAAACCACTCGAATTTGAATGTTTAA 1386 45.74 MLSPLNFLPTSRRVAVIGAGAGGLVTARELGREGHHVVVFERNTRIGGTWVYSSEIESDPLGLDPNRTRIHSSLYKSLRTNLPRELMGVRDYPFVPREGEDRDPRRFPSHREVLKYLEDFANEFGICKLVRFGTEVVFAGLEEVGKWRIEFRCENGDVEEDLFDALVVCVGNYSQPRVAEIPGIDGWPGEQLHSHNYRDPEPFRGKVVVLIGYSSSGTDISQELIGVAKEIHIACRPAKTESSDEKSIISNVSFHPMIESVHKDGTVVFQDGSVVSADVILHCTGYKYHFPFLETNGTVTVDDNRVGPLFKHVFPPALAPGLSFVGLPFKVVPFVIFELQSNWIAGVLSNRIALPSKEEMLADVKAFYEELEARGKPKHRTHKLGGYTPAYCNWLAATCGCPPYEEWRKEMFVATDINKVANLESYRDDWHDDELIHQAYEEFGKYTTTNEGSQNHSNLNV* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2546039 2563471 + CsaV3_3G003010.1 Csa03g00301 521206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00301 461 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 7 447 - -
Csa03g00301 461 SUPERFAMILY FAD/NAD(P)-binding domain 9 238 IPR036188 -
Csa03g00301 461 Gene3D - 13 430 IPR036188 -
Csa03g00301 461 SUPERFAMILY FAD/NAD(P)-binding domain 257 433 IPR036188 -
Csa03g00301 461 PIRSF FMO 10 240 IPR000960 GO:0050660|GO:0050661
Csa03g00301 461 PIRSF FMO 242 409 IPR000960 GO:0050660|GO:0050661
Csa03g00301 461 PANTHER DIMETHYLANILINE MONOOXYGENASE 7 447 - -
Csa03g00301 461 PRINTS Flavin-containing monooxygenase (FMO) signature 192 206 IPR000960 GO:0050660|GO:0050661
Csa03g00301 461 PRINTS Flavin-containing monooxygenase (FMO) signature 36 60 IPR000960 GO:0050660|GO:0050661
Csa03g00301 461 PRINTS Flavin-containing monooxygenase (FMO) signature 12 28 IPR000960 GO:0050660|GO:0050661
Csa03g00301 461 PRINTS Flavin-containing monooxygenase (FMO) signature 270 297 IPR000960 GO:0050660|GO:0050661
Csa03g00301 461 PRINTS Flavin-containing monooxygenase (FMO) signature 335 348 IPR000960 GO:0050660|GO:0050661
Csa03g00301 461 PRINTS Flavin-containing monooxygenase (FMO) signature 219 234 IPR000960 GO:0050660|GO:0050661
Csa03g00301 461 Pfam Flavin-binding monooxygenase-like 248 387 IPR020946 GO:0004499|GO:0050660|GO:0050661
Csa03g00301 461 Pfam Flavin-binding monooxygenase-like 12 236 IPR020946 GO:0004499|GO:0050660|GO:0050661
Csa03g00301 461 Gene3D - 180 283 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00301 - - - csv:101220318 878.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00575 Csa-Chr1:3696677 Csa03g00301 Csa-Chr3:2546039 9.89E-133 dispersed
Csa03g00301 Csa-Chr3:2546039 Csa02g02289 Csa-Chr2:20445049 9.40E-17 dispersed
Csa06g01993 Csa-Chr6:17931427 Csa03g00301 Csa-Chr3:2546039 2.17E-16 dispersed
Csa03g00301 Csa-Chr3:2546039 Csa03g02650 Csa-Chr3:25053439 9.29E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g506 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00282 Cam10g0292 Cec10g0300 Cco10g0296 Clacu10g0292 Cmu10g1131 Cre10g0539 . . . . Lsi07g01322 . . Cme06g02606 . . . . . . . . . . . . . . . Cpe08g00751 . . . . . . . . . . . . . . . . Csa03g00301 Chy06g02023 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00301 Csa_Chr03 FPKM 0.049855 0.0 0.053448 0.0 0.0 0.065581 0.0 0.984841 0.91662 0.797685