Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00303 ATGGACTTGACATCGAAGCACACATCTCCTGTTCTCACTGAACCTGCACCAATGAATAAATCGAGGCTAGGAATCCATCCTGCTATTTTGCCTTACTCTCAATCAGGTGGTTCTTTTCCCCCAAGTAAATATATCACAATCCCAAGGAAAAAGTCAGGAAAGTTTGATGATGTCTGGTCCAATGGTTGGTTGGATGCAATGAAATCCTCTTCTCCTCCTCGGAAGAAGCTAATTAAGGATTTCGATGTTGATTTCCCTTCCGACGATGATACTGATGTTGCTTACAGCTCCTGGATGCTGAAGTATCCTTCAGCACTCAACTCTCTAGAGCAAATTACCAGTTACGCAAAAAATAAGAAAATAGCTGTTTTTTTGGACTATGATGGGACCCTTTCTCCAATAGTAGATGATCCAGATTGTGCTGTTATGTCAAATGCTATGCGTTGTGCTGTAAGAAATGTTGCCAAATATTTTCCAACGGCAATCATTAGTGGAAGAAAGCGAGAAAAGGTTTCTGAGTTGGTAGGACTAACGGAACTCTATTATGCTGGTAGTCATGGGATGGATATCGTCGGCCCTGTGGGTCAAACAGTGCTGAATTCCCATCCCAACTGTATTGGATCTACTGACCAACAGGGCAAGGATGCTAATGTGTTCCAGCCCGCTAGGGAATTCTTACCCATGATAGACGAGGTTTTTGGAACCCTCGTCAAGAAGACAAAAGATATTAAAGGCGCAAAACTTGAAAATCACAAGTTTTGTGCCGCTGTACATTATCGCAATGTAGATGAGAAGAATTGGCCTACAATAGCGCAATGTGTTCATGATGTACTAAAAGACCACCCTCGTTTACGATTAACACATGGGCGGAAGGTTTTAGAGATCCGTCCAGTGATTGATTGGAACAAGGGAAAAGCAGTTGAATTTCTGCTTGAATCTCTAGGATTGAACTCAAGTGAAGACGTGCTCCCTATCTTTATTGGGGATGACAGAACTGATGAAGATGCTTTTAAGGTGCTGCGAGAGAGAAACCAAGGGTACGGCATTTTGGTGTCTCCTATGCCAAAGGAGACCAACGCATTCTACTCTCTTAGGGATCCCTCAGAGGTAATGGAATTCCTGAGAGGATTGGTGAGAAGCCAGAAGAAGAAGGTGGTCGGGGGTGGTGGTGAAGAGGGGGGAAAACAAAGAATTGGATAA 1200 43.42 MDLTSKHTSPVLTEPAPMNKSRLGIHPAILPYSQSGGSFPPSKYITIPRKKSGKFDDVWSNGWLDAMKSSSPPRKKLIKDFDVDFPSDDDTDVAYSSWMLKYPSALNSLEQITSYAKNKKIAVFLDYDGTLSPIVDDPDCAVMSNAMRCAVRNVAKYFPTAIISGRKREKVSELVGLTELYYAGSHGMDIVGPVGQTVLNSHPNCIGSTDQQGKDANVFQPAREFLPMIDEVFGTLVKKTKDIKGAKLENHKFCAAVHYRNVDEKNWPTIAQCVHDVLKDHPRLRLTHGRKVLEIRPVIDWNKGKAVEFLLESLGLNSSEDVLPIFIGDDRTDEDAFKVLRERNQGYGILVSPMPKETNAFYSLRDPSEVMEFLRGLVRSQKKKVVGGGGEEGGKQRIG* 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2571978 2578551 + CsaV3_3G003030.1 Csa03g00303 521208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00303 399 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 342 IPR006379 -
Csa03g00303 399 TIGRFAM T6PP: trehalose-phosphatase 119 379 IPR003337 GO:0003824|GO:0005992
Csa03g00303 399 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED 1 384 - -
Csa03g00303 399 SUPERFAMILY HAD-like 122 378 IPR036412 -
Csa03g00303 399 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 IPR044651 GO:0004805|GO:0005992
Csa03g00303 399 CDD HAD_TPP 122 372 - -
Csa03g00303 399 Pfam Trehalose-phosphatase 124 368 IPR003337 GO:0003824|GO:0005992
Csa03g00303 399 Gene3D - 233 387 IPR023214 -
Csa03g00303 399 Gene3D - 121 207 IPR023214 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00303 K01087 otsB; trehalose 6-phosphate phosphatase [EC:3.1.3.12] - csv:101220548 772.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00303 Csa-Chr3:2571978 Csa03g01615 Csa-Chr3:12059761 1.13E-162 dispersed
Csa03g00303 Csa-Chr3:2571978 Csa06g03170 Csa-Chr6:26988634 1.78E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g499 . Blo03g00173 Bda06g01308 . . Bpe07g00160 . . Cmo06g00785 Cmo16g01108 . . . . . Cpe14g00877 . . . . . . . . Cla10g00284 Cam10g0295 Cec10g0302 Cco10g0298 Clacu10g0294 Cmu10g1133 Cre10g0541 . . . . Lsi07g01330 . . Cme06g02612 . . . . . . Bma05g00775 . . . . Cma06g00764 Cma16g01058 Car06g00683 Car16g01007 Cpe08g00753 . . . . . . . . . . . . . . . . Csa03g00303 Chy06g02019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000914 2 2 2 3 3 3 4 3 3 2 3 3 4 2 2 4 3 5 4 3 2 2 2 2 2 3 2 6 3 2 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00303 Csa_Chr03 FPKM 14.496895 17.16597 268.610107 264.229126 34.643059 34.024117 32.15012 53.041294 52.54192 56.153767