Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00304 ATGTCATCTTCTTCCCATCCTACTACTTTCTCTCAACTTCCTCCTCCTCCTTCCGACCAGCTTTGCTACGTTCATTGTAACATTTGCGACACGGTTTTAGCGGTGAGTGTTCCTTCTACTAGTTTGTTCAAAAGGGTTACTGTTCGTTGTGGCTATTGTGCCAATCTTCTGCCAGTAAACATGTGTGGTGGAATGCTTCTCCCTTCTCCAAGTCAATTTCATGGCTTCACTCACTCAACCACTTTTCTCTCTCCCAATACTCACAATTTCTTGGAAGAGATCTCAAATCCAAATCCAAATTTTTTGATGAACCAAACAGAAGGAATTGATTTAACCATGGCCACTCGTGTACCTAATGATGTTCCAAGACAACCTCCAACCATAAATAGACCTCCAGAAAAGAGACAAAGGGTACCCTCTGCTTACAACCGATTCATCAAAGACGAGATCCAACGCATCAAGGCTGCCAATCCAGACATCTCTCATAGAGAAGCCTTCAGTGCTGCTGCTAAGAACTGGGCTCATTTCCCTCACATTCGATTTGGTTCTTCCTCCTGA 558 43.73 MSSSSHPTTFSQLPPPPSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPVNMCGGMLLPSPSQFHGFTHSTTFLSPNTHNFLEEISNPNPNFLMNQTEGIDLTMATRVPNDVPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKNWAHFPHIRFGSSS* 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2578889 2583619 - CsaV3_3G003040.1 Csa03g00304 521209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00304 185 MobiDBLite consensus disorder prediction 117 139 - -
Csa03g00304 185 PANTHER AXIAL REGULATOR YABBY 3 1 182 - -
Csa03g00304 185 Gene3D High mobility group box domain 123 178 IPR036910 -
Csa03g00304 185 SUPERFAMILY HMG-box 121 176 IPR036910 -
Csa03g00304 185 PANTHER PROTEIN YABBY 6-RELATED 1 182 IPR006780 GO:0007275
Csa03g00304 185 Pfam YABBY protein 17 182 IPR006780 GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g00304 Csa05g00395 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00304 Csa-Chr3:2578889 Csa06g02479 Csa-Chr6:22073762 8.82E-52 dispersed
Csa03g00304 Csa-Chr3:2578889 Csa05g00395 Csa-Chr5:2561275 2.67E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31092 PF04690 YABBY 3.10E-67 CL0114 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00304 K25796 - csv:101219601 390.578