Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00304 ATGTCATCTTCTTCCCATCCTACTACTTTCTCTCAACTTCCTCCTCCTCCTTCCGACCAGCTTTGCTACGTTCATTGTAACATTTGCGACACGGTTTTAGCGGTGAGTGTTCCTTCTACTAGTTTGTTCAAAAGGGTTACTGTTCGTTGTGGCTATTGTGCCAATCTTCTGCCAGTAAACATGTGTGGTGGAATGCTTCTCCCTTCTCCAAGTCAATTTCATGGCTTCACTCACTCAACCACTTTTCTCTCTCCCAATACTCACAATTTCTTGGAAGAGATCTCAAATCCAAATCCAAATTTTTTGATGAACCAAACAGAAGGAATTGATTTAACCATGGCCACTCGTGTACCTAATGATGTTCCAAGACAACCTCCAACCATAAATAGACCTCCAGAAAAGAGACAAAGGGTACCCTCTGCTTACAACCGATTCATCAAAGACGAGATCCAACGCATCAAGGCTGCCAATCCAGACATCTCTCATAGAGAAGCCTTCAGTGCTGCTGCTAAGAACTGGGCTCATTTCCCTCACATTCGATTTGGTTCTTCCTCCTGA 558 43.73 MSSSSHPTTFSQLPPPPSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPVNMCGGMLLPSPSQFHGFTHSTTFLSPNTHNFLEEISNPNPNFLMNQTEGIDLTMATRVPNDVPRQPPTINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKNWAHFPHIRFGSSS* 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2578889 2583619 - CsaV3_3G003040.1 Csa03g00304 521209

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00304 185 MobiDBLite consensus disorder prediction 117 139 - -
Csa03g00304 185 PANTHER AXIAL REGULATOR YABBY 3 1 182 - -
Csa03g00304 185 Gene3D High mobility group box domain 123 178 IPR036910 -
Csa03g00304 185 SUPERFAMILY HMG-box 121 176 IPR036910 -
Csa03g00304 185 PANTHER PROTEIN YABBY 6-RELATED 1 182 IPR006780 GO:0007275
Csa03g00304 185 Pfam YABBY protein 17 182 IPR006780 GO:0007275
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00304 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101219601 390.578
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g00304 Csa05g00395 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00304 Csa-Chr3:2578889 Csa06g02479 Csa-Chr6:22073762 8.82E-52 dispersed
Csa03g00304 Csa-Chr3:2578889 Csa05g00395 Csa-Chr5:2561275 2.67E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g495 Blo02g01054 . Bda06g00039 Bda08g00564 Bpe05g00592 Bpe07g00159 . Bma14g00033 Cmo06g00784 . . Cma15g01149 . Car15g01044 . . . . . . . . . . Cla10g00285 Cam10g0296 Cec10g0303 Cco10g0299 Clacu10g0295 Cmu10g1134 Cre10g0542 . . Cone6ag0698 Cone9ag0698 Lsi07g01331 Csa05g00395 Chy09g01118 Cme06g02614 Blo03g00407 . Bda07g00010 . . Bpe11g00259 . . . . Cmo15g01209 Cma06g00763 . Car06g00681 . Cpe08g00754 Cpe13g00219 Bhi12g00406 . . . . . Lcy12g1797 Cla01g00368 Cam01g0388 Cec01g0381 Cco01g0399 Clacu01g0387 Cmu01g0368 Cre09g2142 Lsi09g00397 Csa03g00304 Chy06g02018 Cme09g01648
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02521 . 3 172 C2C2-YABBY Transcription Factor Family AT1G69180 55.7 1.7e-44 176.0
Csa05g00395 CCT 88 249 C2C2-YABBY Transcription Factor Family AT2G45190 59.4 7.1e-42 167.2
Csa06g02479 . 1 173 C2C2-YABBY Transcription Factor Family AT1G08465 67.4 1.3e-57 219.5
Csa01g02026 . 6 181 C2C2-YABBY Transcription Factor Family AT1G08465 54.4 3.8e-44 174.9
Csa05g00395 CCT 44 238 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.9e-43 172.6
Csa02g00197 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 2.3e-41 165.6
Csa03g00304 CCT 18 182 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 2.4e-38 155.6
Csa05g00395 CCT 55 247 C2C2-YABBY Transcription Factor Family AT4G00180 55.7 6.9e-50 194.1
Csa05g02325 . 19 183 C2C2-YABBY Transcription Factor Family AT1G23420 55.4 1.1e-41 167.2
Csa01g02026 . 8 177 C2C2-YABBY Transcription Factor Family AT2G26580 69.4 1.4e-61 232.6
Csa02g00197 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 2.3e-61 231.9
Csa06g02479 . 1 173 C2C2-YABBY Transcription Factor Family AT2G26580 60.7 9.2e-50 193.4
Csa05g00395 CCT 46 209 C2C2-YABBY Transcription Factor Family AT2G26580 55.4 1.2e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31092 PF04690 YABBY 3.10E-67 CL0114 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00304 Csa_Chr03 FPKM 8.873983 11.491583 22.142855 20.83275 4.898099 2.91961 7.626191 13.346006 13.738922 16.717289