Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00314 ATGTTATCGTTCATTAGATTTCGGAATTTATCCTACAAATTCCGAAACGAAACTGTTTTGATTAGATGTTTTCATTCTGGAACGAATCCGAAATCCAATTCTCCAGATTCTTCCTCCTCTACCGTTGCTATTTTCTGGGATTTGGATAATAAACCACCGAAATCGTTACCGCCTTACCAAGCTGCTGTTAAGCTTAGGACTGCAGCAGCTTCCTTCGGCGCGGTTCGGTATATGGTGGCGTATGCGAATCGGCATGCGTTTAGCTACGTGCCGCAAGTTGTTAGAGAGCGGAAACGAGAGAGGAAGATGCTTAATCAATTGGAGAGAAAAGGTGTGATTAAATCGATTGAACCATATCTGTGTCGTGTTTGTGGGAGGAATTTTTATACGAATGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCATAAGAAGAGGTTGAATCAGATTGAATCTGCGAAGGGTAGTAGAAGAGTGAAGTTGGTTGCTAAGTATTCAATGAAAATACAGAAGTATAAGAATGCTGCTAGGGATGTTTTGCCTGAAGTGGGATATGGTTTAGCTGATGAGTTGAAGAGGGCAGGGTTTTTTGTGAAGACTGTGTCGGATAAGCCTGAAGCTGCTGATGTAGAATTGAGAAATGACATGGTTGAGATTATGGATAGGAGAAAAGCAGAGTGTTTGGTTCTTGTATCAGATGATTCTGATTTTGTGAATGTTTTGAAGGAAGCTAAGTTAAGATGTCTCAGGACAGTTGTTGTAGGGGATTTGAATGATGGGCCATTGAAGAGAAATGCTGATACTGGGTTTTCTTGGCAGGAGATTTTAATGGGGAAGGCTAAAAAAGAGGCTGTTTCTGTTGTGGGAAAATGGAAGGATCGGGATGTTTTGAAGAGATTGGAATGGACATACAATCCTCCGTTGGAGAAGAAAGTGTCTGGTTTAGATGATGATATAGGCGAGGATGACGATGTTGAAGGAGGTTCTGTTGATGGGGGACTTTGTGAGAATATGCAAAATAATGACAGGGGTGCTTGGTGGGATCTCAGCTCTGATGCTGAAACTGATACTGTTTCATCACCATCATGGGAATGA 1104 41.3 MLSFIRFRNLSYKFRNETVLIRCFHSGTNPKSNSPDSSSSTVAIFWDLDNKPPKSLPPYQAAVKLRTAAASFGAVRYMVAYANRHAFSYVPQVVRERKRERKMLNQLERKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEHKKRLNQIESAKGSRRVKLVAKYSMKIQKYKNAARDVLPEVGYGLADELKRAGFFVKTVSDKPEAADVELRNDMVEIMDRRKAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDLNDGPLKRNADTGFSWQEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPPLEKKVSGLDDDIGEDDDVEGGSVDGGLCENMQNNDRGAWWDLSSDAETDTVSSPSWE* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2653115 2654218 - CsaV3_3G003140.1 Csa03g00314 521219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00314 367 MobiDBLite consensus disorder prediction 348 367 - -
Csa03g00314 367 PANTHER - 16 360 - -
Csa03g00314 367 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 16 360 - -
Csa03g00314 367 Pfam NYN domain 177 270 IPR021139 GO:0004540
Csa03g00314 367 ProSitePatterns Zinc finger C2H2 type domain signature. 121 142 IPR013087 -
Csa03g00314 367 Gene3D - 33 278 - -
Csa03g00314 367 SUPERFAMILY beta-beta-alpha zinc fingers 118 144 IPR036236 -
Csa03g00314 367 Coils Coil 90 110 - -
Csa03g00314 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 147 IPR013087 -
Csa03g00314 367 MobiDBLite consensus disorder prediction 316 342 - -
Csa03g00314 367 CDD PIN_LabA-like 129 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00314 Csa-Chr3:2653115 Csa04g02437 Csa-Chr4:24511370 5.93E-73 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31094 PF01936 NYN 3.60E-10 CL0280 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00314 - - csv:101211196 711.064