Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00324 ATGTCCCCTTCCCTTTCTTCTCTCTCCTTCGCCGTCTTTCATATTCCCCTTTTTCTCTCTTCTTTCACACCCACTAACCCATTTCTTCATTTTCTTCAATTCCTCTTATGCCGCTCTCTTTCTGAAACCTCTTCTCTTCCACCGTCTATGGCGGACTCCGACGACCCCGCCGCCGTTGCCGCTCAAGCTGTCCATCGTCGCTACGAAGGCCTTCTGATGGTTCGCACCAAAGCCCTCAAAGGCAAAGGCGCTTGGTACTGGTCTCACCTCGAACCCCTTCTCCTTAAAAACTCCGATACCGGCTTCCCTAAGGCTGTCAAGCTCCGATGCTCCTTATGCGACGCCGTTTTCTCCGCTTCTAACCCTTCTAGAACCGCCTCCGAGCATCTCAAACGAGGCACTTGCCCTAATTTCTACTCTCCTTCCAAAACCCCTCTTCTTTCTGTTTCCCCTGTTTCTCGTAAACGCAACACCGCTGATAGTGATGGTGGGGATTCGTTTTACGACATTTCGCCATTGACGGTGGTGGATCCGTCGGGGGTTTACGGCGGCTCGTTCTCGCCATTTCAACCTCATCAACAACAACCATTGTTGGTGTTGTCCGGTGGGAAAGAGGATTTGGGGGCTTTAGCTATGTTGGAGAACAGTGTAAAAAAGCTTAGAACTCCAAGAACTTCACCTGGGGTATCATTAAACAAGGATCAAATTGATTCTGCGCTTGATTTTCTTACTGATTGGGTGTTTGAATCATCTGGGTCAGTTTCCATTTCGAGTTTAGAGCATCCAAAATTCAAGGCGTTTTTGAATCAAGTTGGATTGCCTTCGATTTCATCGAAGGATTTTGCTACAGTTAGATTGAATTCTAAATACGAAATGGCTAAAGCTGATGTTCATTTGAAAATTAGTGAAGCTATGTTCTTCCAAATCGCTTCTAGTGGGTGGAGACCTCAGAATCAAGAAGATACAACTATGGTTCATATAGCTCTGAACCTCCCAAATGGGACTAGTTTGTATAGAAAAACTCTTATTATTGATTCTTCTGTTCCTTGTAGATTTGTTGAGGAAGTTCTTTGGGATACAGTTTTAGATGTTTGTGGTAACATTAAAGAGAAGTGTGTTGGGATTGTAGCAGATAAGTTCATGAGCAAAGCCTTGAAGAGCTTGGAAAATCAGCATCAATGGCTTGTTAATCTTCCATGTCAGTTTCAAGCTTTCAATAGTTTAGTTAAGGATTTCATTAGAAATCTCCCATTGTTCAAGACAGTAGCTGAAAACTGCAAAAGGGTAGCTCATTTCTTCAATTTTGAGTCTCATATCAGAACAATCTTCCATAAGTATCTGTTACAAGAATGTGGTCATACTTGTTTGATAACATTGTCCACAGCTGAAAGTGAGGAAATAGGAGCTACGACACTTTTTCAAATGGTTGATAACATGCTCGAGTCAGCTCCTGCTATTCAGTTAGCTTGGCTCGATGAAGCTTTCAAGACGACGGTGATTGAGGATCCCATAGCTAGAGAAGTTTCTCACTTAGTTGGGAGTTCTGAGTTTTGGAATGAAGTAGAAGCTGTGCATTGTTTGATCAAATTGGTGAAGGATATGGCGCAAGAAATTGAAATAGAGAAGCCATTGGTTGGCCAATGCCTTCCAATGTGGGAAGAATTGAGAGAGAAAGTGAAAGATTGGTGCAAAAAGTTTCACATCTCAGAAGAATCATTAGAAAAGATAGTTTCAAAGAGGTTTGAGAAAAACTACCACCCGGCTTGGGCTGCAGCATTTGTGCTCGATCCACTCTATCTAATACGAGACAACACCGGGAAGTATCTTCCGCCTTTTAAACGGTTAACAACCGAGCAAGAGAAGGATGTTGACCGCCTCATAACTCGGCTTGTGGCTAAGGAAGAAGCTCACATTGTACTAATGGAGCTGATGAAATGGAGAACAGAAGGGCTTGATCAAGTATATGCAAGAGCTGTACAAATGAAGGAGAAAGATCCCATTACAGGGAAATTGAGAACTGCTAATCCACAAAGTAGTAGGCTTGTTTGGGAAACTTACTTAACTGAGTTCAACTCATTAAGAAAAGTTGCTGTTAGGCTCATTTTTCTTCATGCTACTTCATGTGGGTTCAAAAGCAATGGCAAATTTGAAAGAATGGTGTGTTCTTCATATCGCAGTTCAAGAGCTACAACTGAAAGTATTAAGAAGTTGGTTTTCATTTCAGCTCATTCCAAGCTAGAGAAGAGAAATTTATGCAGCAATAGTAACGAAAACCGTGGAAGCGGCGACGATATCGAGTTGTTTGCAGCGGTAAATAGTGAAGATGATCTGCCAAGTGAGGCTGATGGGTCATCTTCATTGTAA 2364 42.51 MSPSLSSLSFAVFHIPLFLSSFTPTNPFLHFLQFLLCRSLSETSSLPPSMADSDDPAAVAAQAVHRRYEGLLMVRTKALKGKGAWYWSHLEPLLLKNSDTGFPKAVKLRCSLCDAVFSASNPSRTASEHLKRGTCPNFYSPSKTPLLSVSPVSRKRNTADSDGGDSFYDISPLTVVDPSGVYGGSFSPFQPHQQQPLLVLSGGKEDLGALAMLENSVKKLRTPRTSPGVSLNKDQIDSALDFLTDWVFESSGSVSISSLEHPKFKAFLNQVGLPSISSKDFATVRLNSKYEMAKADVHLKISEAMFFQIASSGWRPQNQEDTTMVHIALNLPNGTSLYRKTLIIDSSVPCRFVEEVLWDTVLDVCGNIKEKCVGIVADKFMSKALKSLENQHQWLVNLPCQFQAFNSLVKDFIRNLPLFKTVAENCKRVAHFFNFESHIRTIFHKYLLQECGHTCLITLSTAESEEIGATTLFQMVDNMLESAPAIQLAWLDEAFKTTVIEDPIAREVSHLVGSSEFWNEVEAVHCLIKLVKDMAQEIEIEKPLVGQCLPMWEELREKVKDWCKKFHISEESLEKIVSKRFEKNYHPAWAAAFVLDPLYLIRDNTGKYLPPFKRLTTEQEKDVDRLITRLVAKEEAHIVLMELMKWRTEGLDQVYARAVQMKEKDPITGKLRTANPQSSRLVWETYLTEFNSLRKVAVRLIFLHATSCGFKSNGKFERMVCSSYRSSRATTESIKKLVFISAHSKLEKRNLCSNSNENRGSGDDIELFAAVNSEDDLPSEADGSSSL* 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2708083 2711518 - CsaV3_3G003240.1 Csa03g00324 521229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00324 787 PANTHER F16P17.2 PROTEIN 57 760 - -
Csa03g00324 787 PANTHER OSJNBA0013A04.12 PROTEIN 57 760 - -
Csa03g00324 787 SUPERFAMILY Ribonuclease H-like 355 601 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00324 - - - csv:101211448 1551.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00324 Csa-Chr3:2708083 Csa05g00541 Csa-Chr5:3477562 0 dispersed
Csa03g00324 Csa-Chr3:2708083 Csa05g00370 Csa-Chr5:2382825 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g477 Blo02g01065 . . . Bpe05g00602 . Bma07g01615 Bma14g00563 . Cmo16g01085 . Cma15g01167 Car02g01269 Car15g01056 . Cpe14g00858 . . . . . . . . . . . . . . . . . . . Lsi07g01349 . Chy09g01140 Cme06g02636 . . Bda07g00519 Bda09g00079 Bpe08g01450 Bpe11g00706 . . . Cmo02g01548 Cmo15g01229 . Cma16g01039 . Car16g00989 . . Bhi12g00575 . . . . . . . . . . . . . . Csa03g00324 Chy06g02000 Cme09g01671
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014394 0 0 0 0 0 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 0 1 0 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00324 Csa_Chr03 FPKM 3.370392 2.939331 6.017856 5.873241 7.288418 6.765449 7.713532 4.790401 5.296257 5.418869