Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00331 ATGATGATGGAGATGGAATGGCCTTCTCGTCTTGATGAATACGAAAAGCTTGTTATTAGGATGAACACTCCCAGGGTTGTGATTGACAATGGGGCTTGCTCTACGGCCACTCTGGTGAAGGTTGATAGTGCTAGAAGATTTGGAAATCTCTTGGAGGCTGTACAGGTTCTTACTGATTTGAACCTTTCAATCAAGAAAGCTTATGTTTCTTCAGATGGAAGATGGTTCATGGATGTGTTTCATGTTACCGATCAGAACGGCGAGAAATTAACTGACGAGAGCGTGATTAGCTACCTCGAGCAGTCTCTTGGGACGACTCATTATCGAAGGAATGAAGAATTTAATGGGACCACCACAGCTTTGGAGCTCACTGGGACCGACCGTGTTGGTCTTCTTTCCGAGGTGTTTGCTGTTCTAGCCGATCTGCAGTGTGATGTGGTGGAGGCTAAAGTTTGGACTCACAATGGTAGGATTGCTTCCTTGATCTATGTCAAGGATTGCAACTCCGGTTCCCCCATAGAAGACAGACAGAAAATTGACACCATTGTTGCAAGATTGAGGAGTGTTCTTAAAGGAGACAATGACATTCGTAGTGCCAAGACTTCTGTCTCTATGGCAGTCACACATACCGAAAGGAGATTGCATCAAATGATGTTTGCTGATCGTGATTATGAGAGGAAGCCTATCTTGAAGTTGAATGCTGATAATTCCCCTGCTGTAACGGTTCAAAACTGTGCCGAAAGGGGTTACTCAGTTGTATGTGTTCAATGCAAAGATCGAACGAAACTATTGTTTGATGTGATATTCACTTTGACAGACATGCAATATGTGGTGTTTCATGCCAACATCAACACTGCACAAGAAAGAGCATATCTGGAATTCTACATTAGGCACAGCGATGGAACCCCTATTAGCTCCGAAGCCGAGAGGCAGAGAGTTATTCAATGTTTACAAGCTGCTATACAAAGAAGAGCATCTGAGGGTGTGAGGCTAGAACTATGCACAGAAGACAGGCCAGGCCTTCTAGCCGATGTCATGAGGACGTTCCGAGAGAACGGTCTGAACGTAACAAGGGCTGAGATCTCCACCACAAGGGCTGAGATCTCCACCACAAGGCACATGGCTCTAAATGTATTCTACGTAACCGACGTAGTAGGAAATGTAGCTGATCAGAAAACAATCGAGTCGGTTAGACAAAGGATTGGTTTGAGTAACTTGAAAGTGAAGGAACTGCCATCAACTTATCATCAAACGACGGAGAGGGAAGAACAAACATTTGGAGTTGGCGGGGCCGTGTTGTTTACTCTTGGAAGCATGGTAAGGAGGAACCTATACAATCTAGGACTGATCAGATCGTGTTCGTGA 1365 44.76 MMMEMEWPSRLDEYEKLVIRMNTPRVVIDNGACSTATLVKVDSARRFGNLLEAVQVLTDLNLSIKKAYVSSDGRWFMDVFHVTDQNGEKLTDESVISYLEQSLGTTHYRRNEEFNGTTTALELTGTDRVGLLSEVFAVLADLQCDVVEAKVWTHNGRIASLIYVKDCNSGSPIEDRQKIDTIVARLRSVLKGDNDIRSAKTSVSMAVTHTERRLHQMMFADRDYERKPILKLNADNSPAVTVQNCAERGYSVVCVQCKDRTKLLFDVIFTLTDMQYVVFHANINTAQERAYLEFYIRHSDGTPISSEAERQRVIQCLQAAIQRRASEGVRLELCTEDRPGLLADVMRTFRENGLNVTRAEISTTRAEISTTRHMALNVFYVTDVVGNVADQKTIESVRQRIGLSNLKVKELPSTYHQTTEREEQTFGVGGAVLFTLGSMVRRNLYNLGLIRSCS* 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2758610 2761677 - CsaV3_3G003310.1 Csa03g00331 521236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00331 454 Pfam ACT domain 331 388 IPR002912 -
Csa03g00331 454 Pfam ACT domain 121 175 IPR002912 -
Csa03g00331 454 PANTHER [PROTEIN-PII] URIDYLYLTRANSFERASE-RELATED 5 452 - -
Csa03g00331 454 CDD ACT_ACR_3 250 324 - -
Csa03g00331 454 Gene3D - 118 194 - -
Csa03g00331 454 Gene3D - 328 405 - -
Csa03g00331 454 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 5 452 IPR040217 -
Csa03g00331 454 ProSiteProfiles ACT domain profile. 330 416 IPR002912 -
Csa03g00331 454 SUPERFAMILY ACT-like 117 190 IPR045865 -
Csa03g00331 454 SUPERFAMILY ACT-like 33 102 IPR045865 -
Csa03g00331 454 CDD ACT_ACR_1 36 107 - -
Csa03g00331 454 SUPERFAMILY ACT-like 326 400 IPR045865 -
Csa03g00331 454 ProSiteProfiles ACT domain profile. 120 204 IPR002912 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00331 - - - csv:101205369 894.419
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa03g00331 Csa05g00364 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00331 Csa-Chr3:2758610 Csa06g02100 Csa-Chr6:18702003 1.05E-149 dispersed
Csa03g04320 Csa-Chr3:37783214 Csa03g00331 Csa-Chr3:2758610 3.60E-119 transposed
Csa04g00296 Csa-Chr4:1836767 Csa03g00331 Csa-Chr3:2758610 8.59E-09 transposed
Csa06g00418 Csa-Chr6:3631892 Csa03g00331 Csa-Chr3:2758610 2.90E-06 transposed
Csa06g00800 Csa-Chr6:6435164 Csa03g00331 Csa-Chr3:2758610 1.25E-162 transposed
Csa03g00331 Csa-Chr3:2758610 Csa05g00364 Csa-Chr5:2332642 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g467 Blo02g01069 . Bda06g00055 Bda08g00552 Bpe05g00607 Bpe07g00144 Bma07g01616 Bma14g00568 Cmo06g00768 Cmo16g01078 . Cma15g01174 . Car15g01062 . Cpe14g00852 . . . . . . . . Cla10g00310 Cam10g0323 Cec10g0334 Cco10g0329 Clacu10g0320 Cmu10g1159 Cre10g0569 Cone8ag0356 Cone12ag0348 Cone6ag0721 Cone9ag0725 Lsi07g01356 Csa05g00364 Chy09g01144 Cme06g02643 Blo03g00385 Blo19g00283 Bda07g00514 . Bpe08g01451 Bpe11g00701 Bma05g00786 . . . Cmo15g01235 Cma06g00746 Cma16g01032 Car06g00666 Car16g00983 Cpe08g00775 Cpe13g00200 Bhi12g00361 . . Lac11g2196 Hepe06g1179 . Lcy12g1747 Cla01g00341 Cam01g0354 Cec01g0351 Cco01g0364 Clacu01g0358 Cmu01g0338 Cre09g2172 Lsi09g00367 Csa03g00331 Chy06g01994 Cme09g01676
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001092 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 3 2 2 2 2 6 3 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00331 Csa_Chr03 FPKM 0.162571 0.0 1.072061 1.420957 0.0 0.0 0.0 3.08587 2.254702 3.883502