Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00336 ATGAGAAAGGTTAATCAGCTTTGTCTTTCTCATGCTCTTCTGTTCTTCATTCTATTTCTCTTTGGATTTTGCTCTGCTGTCACTGAGAAGGACATTTTGCTTCAATTCAAAGATGCTGTTACAGAGGACCCGTTTAATTTCTTGAGAACTTGGGTTGCCGGCGAGGATCATTGCCGTAGTTTCAACGGCGTGTTCTGTAACTCCGATGGGTTTGTGGAAAGGATTGTTTTATGGAACTCTAGCTTAGCTGGAACTTTGTCGCCTTCCTTGTCGGGATTAAAGTTCTTGAGGACTTTGACATTGTATGGAAATAGATTTACTGGTAATATTCCGATCGAATATGGCGCCATTGTTACACTATGGAAGTTGAACTTGAGCTCCAATGCGTTTTCGGGTTTGGTGCCAGAGTTCATCGGCGATTTGCCGAGCATTCGGTTTCTGGATTTGTCTAGAAATGGCTTTACTGGGGAGATTCCTTCAGCTGTGTTCAAGAATTGTTTTAAAACTAGATTTGTTTCATTTTCTCATAATAGATTTTCAGGTAGGATACCTTCAACAATTTTGAATTGTTTGAGCCTTGAAGGCTTTGATTTCTCTAATAATGATCTAAGTGGGAGCATTCCTTTGCAACTCTGTGACATTCAAAGATTAGAGTATGTTTCTGTAAGAAGCAATGCATTATCTGGGAGTGTCCAAGGGCAGTTCTCTTCTTGCCAGAGTTTGAAACTTGTGGATCTGAGTAGCAATATGTTCACTGGGTCACCGCCGTTTGAGGTTCTCGGATTCAAAAACATCACTTATTTTAATGTCTCATATAACAGGTTTAGTGGGGGAATTGCAGAGGTGGTGAGTTGTAGCAATAATCTGGAAGTTCTTGATGTTTCAGGAAATGGTTTGAATGGAGAGATCCCATTAAGCATTACAAAGTGTGGGAGTATTAAAATATTAGATTTTGAATCTAACAAGCTGGTTGGGAAGATCCCTGCTGAACTTGCAAATTTGAACAAGCTCTTGGTGCTTCGGTTGGGTTCTAATTCGATCACCGGGACAATTCCGGCCATTTTCGGGAACATCGAGCTACTTCAGGTTTTGAATTTGCACAACCTCAATCTTGTTGGTGAGATTCCTAACGACATAACCAGTTGCAGGTTTCTTCTTGAGTTGGATGTTTCTGGTAATGCATTGGAAGGGGAGATTCCTCAAACTCTTTACAACATGACATACCTTGAAATCCTTGATCTACACGATAACCATCTGAACGGAAGCATTCCATCGACGCTTGGGAGCCTCTTGAAACTGCAGTTTCTGGATCTATCTCAAAACCTGCTGTCTGGTTCAATACCTCGTACTCTTGAAAATCTCACATTGCTGCACCATTTCAACGTTTCTTTCAATAACCTTTCAGGCACCATACCTTCTGTAAATACGATCCAAAATTTCGGGCCTTCTGCATTCTCGAACAATCCTTTTCTTTGTGGTGCTCCCTTGGATCCTTGCTCTGCAGGCAACACCCCTGGCACGACTTCCATATCGAAGAAACCAAAGGTTCTTAGTCTTTCTGCAATCATTGCAATCATAGCAGCTGTTGTGATCCTGGTCGGGGTATGCGTGATCTCCATTTTGAATCTAATGGCTCGGACGAGGAAGGCAAGGAGCACCGAAATCATTGAGAGTACACCGCTTGGCTCAACCGATTCAGGCGTCATAATTGGGAAACTGGTTCTTTTCAGCAAAACTTTGCCTTCCAAGTATGAAGACTGGGAGGCTGGCACCAAAGCTTTGCTCGACAAGGAATGCATAATAGGGGGTGGCTCAATCGGCACCGTCTACAGAACAAGTTTTGAGGGCGGCATCTCCATTGCTGTTAAGAAGCTGGAGACTCTAGGGAGGATCAGAAGTCAAGATGAGTTTGAGACTGAAATCGGACGTTTGGGAAACATCAAACACCCAAACTTAGTCGCTTTCCAGGGCTACTATTGGTCGTCATCGATGCAGTTGATTCTCTCTGAATTCGTCACGAATGGCAATTTGTACGACAATCTACATAGTCTGAATTATCCAGGCACCAGCACAGGCATTGGCAATGCGGAGTTGCATTGGTCTAGAAGATACAAAATTGCAATTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAGACCTCCAATTCTTCACCTCAACATAAAATCAACTAACATACTGTTAGATGAAAACTACGAAGGCAAGTTATCCGATTACGGGTTGGGGAAGTTGCTTCCAGTTTTGGACAATTATATCTTAACAAAGTACCATAGTGCCGTAGGGTACGTTGCACCGGAGTTAGCACAAAGTTTGAGAGCTAGTGAAAAGTGCGATGTGTATAGTTTCGGAGTGATTCTACTGGAGTTGGTAACAGGGAGGAAGCCAGTTGAGAGTCCAAGAGCAAATCAGGTAGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAGTGGTTCTGCTTCTGACTGTTTCGATCGTAACTTACGTGGCATTGCCGAAAACGAGCTCATCCAAGTGATGAAGTTGGGATTGATTTGTACATCTGAGATCCCTTCGAAGAGACCGAGCATGGCAGAGGTTGTTCAAGTTCTTGAGTCGATACGAAACGGATTAGGATCATAG 2649 42.85 MRKVNQLCLSHALLFFILFLFGFCSAVTEKDILLQFKDAVTEDPFNFLRTWVAGEDHCRSFNGVFCNSDGFVERIVLWNSSLAGTLSPSLSGLKFLRTLTLYGNRFTGNIPIEYGAIVTLWKLNLSSNAFSGLVPEFIGDLPSIRFLDLSRNGFTGEIPSAVFKNCFKTRFVSFSHNRFSGRIPSTILNCLSLEGFDFSNNDLSGSIPLQLCDIQRLEYVSVRSNALSGSVQGQFSSCQSLKLVDLSSNMFTGSPPFEVLGFKNITYFNVSYNRFSGGIAEVVSCSNNLEVLDVSGNGLNGEIPLSITKCGSIKILDFESNKLVGKIPAELANLNKLLVLRLGSNSITGTIPAIFGNIELLQVLNLHNLNLVGEIPNDITSCRFLLELDVSGNALEGEIPQTLYNMTYLEILDLHDNHLNGSIPSTLGSLLKLQFLDLSQNLLSGSIPRTLENLTLLHHFNVSFNNLSGTIPSVNTIQNFGPSAFSNNPFLCGAPLDPCSAGNTPGTTSISKKPKVLSLSAIIAIIAAVVILVGVCVISILNLMARTRKARSTEIIESTPLGSTDSGVIIGKLVLFSKTLPSKYEDWEAGTKALLDKECIIGGGSIGTVYRTSFEGGISIAVKKLETLGRIRSQDEFETEIGRLGNIKHPNLVAFQGYYWSSSMQLILSEFVTNGNLYDNLHSLNYPGTSTGIGNAELHWSRRYKIAIGTARALAYLHHDCRPPILHLNIKSTNILLDENYEGKLSDYGLGKLLPVLDNYILTKYHSAVGYVAPELAQSLRASEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLESGSASDCFDRNLRGIAENELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLGS* 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2797580 2801639 + CsaV3_3G003360.1 Csa03g00336 521241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00336 882 ProSiteProfiles Protein kinase domain profile. 595 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00336 882 Gene3D Phosphorylase Kinase; domain 1 571 671 - -
Csa03g00336 882 Gene3D Ribonuclease Inhibitor 383 500 IPR032675 -
Csa03g00336 882 PANTHER UNNAMED PRODUCT 24 879 - -
Csa03g00336 882 PANTHER - 24 879 - -
Csa03g00336 882 Gene3D Ribonuclease Inhibitor 284 380 IPR032675 -
Csa03g00336 882 Gene3D Ribonuclease Inhibitor 185 283 IPR032675 -
Csa03g00336 882 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Csa03g00336 882 SUPERFAMILY L domain-like 259 498 - -
Csa03g00336 882 CDD STKc_IRAK 601 876 - -
Csa03g00336 882 Pfam Protein kinase domain 599 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa03g00336 882 SUPERFAMILY L domain-like 28 279 - -
Csa03g00336 882 Gene3D Transferase(Phosphotransferase) domain 1 672 880 - -
Csa03g00336 882 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Csa03g00336 882 Pfam Leucine Rich Repeat 432 454 IPR001611 GO:0005515
Csa03g00336 882 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515
Csa03g00336 882 SUPERFAMILY Protein kinase-like (PK-like) 596 874 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00336 Csa-Chr3:2797580 Csa04g00347 Csa-Chr4:2104623 5.48E-166 dispersed
Csa03g00336 Csa-Chr3:2797580 Csa06g00234 Csa-Chr6:1602954 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77950 PF00069 Pkinase 3.70E-34 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00336 - - csv:101212415 1703.34