Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00340 ATGGCAAAGCAGGGGAGTTCAGTTTTTCTCGAAGACTGGTTGAAGAGCATCGGCGGTATTGCTAACTCCAAACCCACTTCCTCTTCTGCTCGAGAAATTATCCAAGCGTGGGCTGAGCTTAGAAGCTCTTTGGAGCATCAATTCTTCGATGATCGTCACATTCAATCCCTTAAAATTCTTGTTAACTCTCAGTCTTCACTCTATGTTGCAGACCCTCAAGCTAAGTTGGTGATTTCTTTACTTTCTTCTCCTAATTTCTCTATTTCTGATGAATCCTATCCCCTCTTTTTGAGGATTCTTTATATCTGGCTCAGAAAATCTCTCCGACCCTCTTTAGTTCTTGTCGATTCATCCGTTGAGGTTCTCTCTCAGATTTTCTCTTCCAAAATTGAATTGCGGAAGAACCCTTTGTTTATCTCTGAAGGCGTTTTAGTTTTGGGTGCAATTTCGTATCTGCCTTCAGCTTCAGAAAAATCAAAATTATGCTGTTTGGAGTTGCTTTGCAGGGTTTTGGAAGAAGATTACCTACTGGTTGGAGGGATAGTTCCAGAATTTCTTGCGGGGATTGGTTATGCTTTTTCTTCATCAGTAAATGCTCATGTTGTTAGATTGTTAGATTCTTTGTTAGGAATTTGGAGTAAGGTAAATGGCCCTATCGATACTCTTTCTAGTGGGTTAATGATTCTTCACATGATTGAATGGGTGACCTCTGGTTTGATTAATCTTCATTCTTTTGAGAAATTAGATGTTTTTAGCCATGCGACTTTAGTGTCTTCAAAGGAAAGTTATGCTTCATTTGCTGTTGTAATGGCTGCAGCTGGAATATTGAGGGCTTTTAATACTTACAAAGGCTTGTTGAGTAGTTCAGAAAGAGAAACGATATCTAGAATAAGGATTTCAGCTCAGGATTGCTTAGAATCTATAGCAAGGAATTTTATTTCTACTATGGAAGGATCTTCAATTACAGGCAATGACCATAGAAGGAGCGTGCTTCTATTGTGTATTTCATTGGCAATAGCACGTTGTGGCCCAGTGTCAGCTCGCCCGCCTGTGCTCATTTCCGTTGTTTATGCTTTGTTGACTGAAATATTTCCTTTGCAGCGTTTATATGCCAAAATCAATGAATTTTCTTTTTCCGAGTTGAGTGTTTTGGGGCTTACTCTAGTGAAAGAGCATCTGGGTAGTATTCCTTTTAAGGAAGCCGGGGCCATTGCTGGTGTTCTTTGCAGTCAGTATGCTTCACTTGGGGAAGAGGAAAAAAGTATTGTGGAGAATCTTGTATGGGATTACTGTCGAGATGTCTACTCAAGGCACAGACTAGTCAATTTGGTGCTTCATGGTAGAGAGGATGAATTACTAGAGAGTATCGAGAAAATCGCAGAATCTGCTTTTCTCATGGTAGTAGTTTTTGCATTAGCTGTCACAAAAGAAAAGTTAGGTTCCAAATATACACTAGAAAGTCAGTTTGACGTATCGGTAAAAATACTTGTTTCATTCTCTTGTATGGAATACTTTCGGCGTATTCGCTTGCCAGAATATATGGATACTATCCGAGGTGTTGTTGGAAGCATTCAGGGGAATGAGTCTGCCTGTGTCTATTTCATTGAGTCAATGCCCACATACCAAGATCAAACGAATGGCCCTGATAACTCTATTGGGCAGAAAATACAATATTCCTGGGCGAAGGACGAAGTGCAAACTGCACGTATGTTGTTTTATATACGAGTCGTTCCAACTTGCATCGAGCATGTTCCTACTCAAGTGTATGGGAAGGTGGTAGCTCCAACAATGTTTCTATATATGGGACATCCAAATTCAAAAGTTGTCCGTGCTTCACACTCTGTGTTTATAGCTTTCATGTCCGGGAAGGATGACATTGACGATGAAAAGAGAACAACATTGAAGGAGGAGCTTGTTTTCTACTACATCGAGAGATCTTTATCGGGGTATCCTGGCATTACACCATTCGAGGGCATGGCTTCAGGAGTTGCTGCTTTGGTGCGATATCTTCCTGCAGGAAGTCCAGCAATCTTTTATTGTATTGACAGTCTTACTGTAAAAGCTACAAGCCTTTGCAGTGAAAACTTCATGGATGATGGAGATTTGTGGAAGACTTGGCAAGGAGACTTGGAGCCTTCCAAGAAAATTTTAGACATGCTATTACGGCTCATTTCTCTCGTTGACATACAGGTCCTACCAAGCTTGATGAAGAGTTTAGCACAACTAATCATCAAGTTACCAACAGAAGGCCAAAATCTGATTCTTGATCAGTTATACTCTCTGGTTTCGGAAGCCGATGATGTCACCCGTAAACCTATGTTAGTCTCATGGCTACAGTCGTTATCTTATCTTTGTTCCCTATCTAAGAGTGCAGAGGCACATTCTAATGAGAAGCAAAGTTTGAAGCAAAGTACACGGCTTGCAAACTTTGCATGGCTTATTGACCCATTGAACCGTATTCGATCCTATGCACGACTTTGA 2481 40.71 MAKQGSSVFLEDWLKSIGGIANSKPTSSSAREIIQAWAELRSSLEHQFFDDRHIQSLKILVNSQSSLYVADPQAKLVISLLSSPNFSISDESYPLFLRILYIWLRKSLRPSLVLVDSSVEVLSQIFSSKIELRKNPLFISEGVLVLGAISYLPSASEKSKLCCLELLCRVLEEDYLLVGGIVPEFLAGIGYAFSSSVNAHVVRLLDSLLGIWSKVNGPIDTLSSGLMILHMIEWVTSGLINLHSFEKLDVFSHATLVSSKESYASFAVVMAAAGILRAFNTYKGLLSSSERETISRIRISAQDCLESIARNFISTMEGSSITGNDHRRSVLLLCISLAIARCGPVSARPPVLISVVYALLTEIFPLQRLYAKINEFSFSELSVLGLTLVKEHLGSIPFKEAGAIAGVLCSQYASLGEEEKSIVENLVWDYCRDVYSRHRLVNLVLHGREDELLESIEKIAESAFLMVVVFALAVTKEKLGSKYTLESQFDVSVKILVSFSCMEYFRRIRLPEYMDTIRGVVGSIQGNESACVYFIESMPTYQDQTNGPDNSIGQKIQYSWAKDEVQTARMLFYIRVVPTCIEHVPTQVYGKVVAPTMFLYMGHPNSKVVRASHSVFIAFMSGKDDIDDEKRTTLKEELVFYYIERSLSGYPGITPFEGMASGVAALVRYLPAGSPAIFYCIDSLTVKATSLCSENFMDDGDLWKTWQGDLEPSKKILDMLLRLISLVDIQVLPSLMKSLAQLIIKLPTEGQNLILDQLYSLVSEADDVTRKPMLVSWLQSLSYLCSLSKSAEAHSNEKQSLKQSTRLANFAWLIDPLNRIRSYARL* 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2825151 2830780 - CsaV3_3G003400.1 Csa03g00340 521245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00340 826 PANTHER OBSCURIN-LIKE PROTEIN 1 804 - -
Csa03g00340 826 SUPERFAMILY ARM repeat 74 786 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00340 - - - csv:101212894 1566.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g445 Blo02g01076 . . . Bpe05g00614 . . . . . . . . . . . . Bhi11g00227 Tan01g1959 . . Hepe06g1190 . . Cla10g00317 Cam10g0332 Cec10g0346 Cco10g0338 Clacu10g0329 Cmu10g1169 Cre10g0579 . . . . Lsi07g01366 . . Cme06g02651 . . . . . . Bma05g00794 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00340 Chy06g01985 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005625 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 9 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00340 Csa_Chr03 FPKM 2.954762 3.233269 2.675047 2.88144 2.437397 2.089652 2.406112 1.917268 2.062788 2.45998