Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00341 ATGGCATTTCTACGGTCCACAGCAACAACAACTAGCTTTGCCATAGCGGCAGCATCTGCTTTACCTGCAGCTTTCATCTTCACCGGCCCTTCTTCTTCTTCCCTCCCTTTTCATTTCCCTCAATCATTCAAACCCATTTCCCTTTCTTTATATTCCTCTCAATTCCCAACTTCAAATTCCTTCGGATTCGTCAGAAACTTTGCCCCTCCTCCCTCTGCTGTTCGTATGGAAACACCCACTTCGGAATCAATCTCTTCCTCTCAGAACAATGTTGATTTGCCTGAACTTTTGACCGAGTATATGGTGGATATGAAATGTGAGGGCTGCGTTAGTGCCGTCAAGAACAAATTACAGGGTGTTGACGGTGTAAAGAGTGTTGATGTGGACTTGAGTAATCAAGTGGTTAGGATATTGGGTGCAACGCCTGTGAAGATAATGACTGAAGCTCTGGAGCAGACAGGTCGAAAAGCTCGGTTAATTGGGCAAGGGGTTCCCGAGGATTTCTTAATTTCTGCTGCTGTTGCTGAATTTAAAGGCCCGAATATATTTGGTGTGGTTCGATTGGCTCAGGTAAATATGGAATTGACCCGGGTTGAAGCCAATTTTAGTGGACTGTCTCCTGGAAAGCATGGTTGGTCAATCAATGAATTTGGTGATCTGACAAAAGGTGCTGCTAGCACAGGAAAAATCTTTGGTTCTGCAGATTCTGACCCTAGTAATGAGCCTCTGGGTGACCTGGGAACATTAGATGTTAATGAAAAGGGTGAAGCCTTTTTCTCTGGCGTCAAACAGAAGCTGCGAGTTTCTGATGTTATTGGACGATCAATAGCTGTGTATGAGACCGAAGACAAATCAGTGCCAGGCATTACAGCAGCAGTAGTTGCTCGAAGTGCCGGTGTTGGAGAAAACTACAAGCAGCTATGCACCTGTGATGGGACTACCATATGGGAATCAAGTGACAGGGATTTCGTCACCAGCAAAGTCTAA 987 45.19 MAFLRSTATTTSFAIAAASALPAAFIFTGPSSSSLPFHFPQSFKPISLSLYSSQFPTSNSFGFVRNFAPPPSAVRMETPTSESISSSQNNVDLPELLTEYMVDMKCEGCVSAVKNKLQGVDGVKSVDVDLSNQVVRILGATPVKIMTEALEQTGRKARLIGQGVPEDFLISAAVAEFKGPNIFGVVRLAQVNMELTRVEANFSGLSPGKHGWSINEFGDLTKGAASTGKIFGSADSDPSNEPLGDLGTLDVNEKGEAFFSGVKQKLRVSDVIGRSIAVYETEDKSVPGITAAVVARSAGVGENYKQLCTCDGTTIWESSDRDFVTSKV* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2831528 2835234 - CsaV3_3G003410.1 Csa03g00341 521246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00341 328 Pfam Copper/zinc superoxide dismutase (SODC) 184 285 IPR001424 GO:0006801|GO:0046872
Csa03g00341 328 SUPERFAMILY HMA, heavy metal-associated domain 97 160 IPR036163 GO:0046872
Csa03g00341 328 Pfam Heavy-metal-associated domain 100 155 IPR006121 GO:0046872
Csa03g00341 328 Gene3D Superoxide dismutase, copper/zinc binding domain 166 296 IPR036423 GO:0006801|GO:0046872
Csa03g00341 328 ProSiteProfiles Heavy-metal-associated domain profile. 96 159 IPR006121 GO:0046872
Csa03g00341 328 PANTHER COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE, CHLOROPLASTIC/CYTOSOLIC 15 328 - -
Csa03g00341 328 SUPERFAMILY Cu,Zn superoxide dismutase-like 161 320 IPR036423 GO:0006801|GO:0046872
Csa03g00341 328 CDD HMA 99 158 IPR006121 GO:0046872
Csa03g00341 328 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 15 328 IPR024134 -
Csa03g00341 328 Gene3D - 86 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00341 K04569 CCS; copper chaperone for superoxide dismutase - csv:101206552 621.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00341 Csa-Chr3:2831528 Csa06g01242 Csa-Chr6:10443370 6.94E-12 dispersed
Csa03g00341 Csa-Chr3:2831528 Csa01g02835 Csa-Chr1:24887785 5.74E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g438 . Blo03g00183 Bda06g00061 . . Bpe07g00137 . . . . . . . . . . . Bhi11g00229 . . . . . . Cla10g00318 Cam10g0333 Cec10g0347 Cco10g0339 Clacu10g0330 Cmu10g1170 Cre10g0580 . . Cone6ag0730 Cone9ag0734 Lsi07g01367 . . Cme06g02652 . . . . . . . Bma12g00113 . . . Cma06g00735 . Car06g00654 . Cpe08g00784 . . . . . . . . . . . . . . . . Csa03g00341 Chy06g01984 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009814 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa03g00341 Csa_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.366138 1.05468 0.565327