Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa03g00346 ATGCATAAACATACGAAAACAACAATGGCTTCCCATTTCCCTCGTTGTAGTCTTGTCCTCACCATCTTTTTCTTGTCCTTTACAATGCCGGAGATGACAACTAAATCTGTCCTCGCCATCTTCCGACCAAGTCCTTGGAAGCTCGCCCATGCCACCTTCTATGGGGATGAGACTGCATCTGAGACAATGGGAGGAGCGTGTGGTTATGGAAACTTGTTCACAAATGGGTATGGCGTTGATACGGCGGCTCTAAGCTCTACACTCTTCAACAATGGCTACGCTTGTGGAACTTGCTTTCAAATCAAATGTGCTCAATCCAAAGCTTGTTACTCTAATGTTGCTTTCACGACCGTGACTGCCACCAACCTTTGCCCCCCAAATTGGGCTAAACCTTCGGACAACGGCGGATGGTGCAACCCTCCAAGGGTTCACTTCGACATGTCGAAGCCAGCCTTTATGAAGATCGCCAATTGGAAGGCTGGGATCGTCCCCGTCGCGTACCGACGTGTCCCGTGCGGTAAAAAAGGTGGCATTCGGTTCACATTACAAGGAAATGGCTACTGGCTTTTGGCGTACGTGATGAATGTCGGTGGCGGCGGCGACGTGTCGGGAATGTGGGTGAAAGGGAGCAAAACAGGGTGGATCAAAATGAGCCATAACTGGGGAGCTTCATATCAAGCCTTTTCAACTTTGGTTGGCCAATCTCTCTCTTTTAGAATCACTTCTTACACAACCAAAGAGACCATCATAGCTTGGAACGTTGCTCCATCTAGTTGGAGGTTTGGTTCAACCTACAACGCCAACGTCAACTTCCGTTGA 819 48.84 MHKHTKTTMASHFPRCSLVLTIFFLSFTMPEMTTKSVLAIFRPSPWKLAHATFYGDETASETMGGACGYGNLFTNGYGVDTAALSSTLFNNGYACGTCFQIKCAQSKACYSNVAFTTVTATNLCPPNWAKPSDNGGWCNPPRVHFDMSKPAFMKIANWKAGIVPVAYRRVPCGKKGGIRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIKMSHNWGASYQAFSTLVGQSLSFRITSYTTKETIIAWNVAPSSWRFGSTYNANVNFR* 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2855660 2857112 - CsaV3_3G003460.1 Csa03g00346 521251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa03g00346 272 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 177 IPR007112 -
Csa03g00346 272 Gene3D - 173 272 IPR036749 -
Csa03g00346 272 PRINTS Expansin signature 76 90 IPR002963 GO:0009664
Csa03g00346 272 PRINTS Expansin signature 116 126 IPR002963 GO:0009664
Csa03g00346 272 PRINTS Expansin signature 135 152 IPR002963 GO:0009664
Csa03g00346 272 PRINTS Expansin signature 152 165 IPR002963 GO:0009664
Csa03g00346 272 PRINTS Expansin signature 176 188 IPR002963 GO:0009664
Csa03g00346 272 PRINTS Expansin signature 188 209 IPR002963 GO:0009664
Csa03g00346 272 PRINTS Expansin signature 253 269 IPR002963 GO:0009664
Csa03g00346 272 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576
Csa03g00346 272 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Csa03g00346 272 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Csa03g00346 272 PRINTS Expansin/Lol pI family signature 160 176 IPR007118 GO:0005576
Csa03g00346 272 PRINTS Expansin/Lol pI family signature 214 228 IPR007118 GO:0005576
Csa03g00346 272 PRINTS Expansin/Lol pI family signature 253 267 IPR007118 GO:0005576
Csa03g00346 272 Gene3D - 30 172 IPR036908 -
Csa03g00346 272 SUPERFAMILY PHL pollen allergen 174 266 IPR036749 -
Csa03g00346 272 SUPERFAMILY Barwin-like endoglucanases 37 195 IPR036908 -
Csa03g00346 272 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 267 IPR007117 -
Csa03g00346 272 PANTHER EXPANSIN-A7 17 272 - -
Csa03g00346 272 SMART dpbb_1 81 167 IPR007112 -
Csa03g00346 272 Pfam Lytic transglycolase 81 167 IPR009009 -
Csa03g00346 272 Pfam Expansin C-terminal domain 178 256 IPR007117 -
Csa03g00346 272 PANTHER EXPANSIN-A15 17 272 IPR002963 GO:0009664
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g00346 Csa05g00340 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00346 Csa-Chr3:2855660 Csa01g02423 Csa-Chr1:21492231 3.05E-98 dispersed
Csa03g00346 Csa-Chr3:2855660 Csa05g00340 Csa-Chr5:2174486 1.05E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa03g00346 - - csv:101207770 582.793